Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03949 ATGGCGTATCAAAACCACCAACTCTCTCAAGACCATTTCACTCCCGATGACTCTACCACCAAACCAACCTCCGAACCTCACCAATCCTTCCAACCCGCACCCAACTGGCTCAACACCGCTCTCCTCCGTAACAACTCCCCAACCACCAACAACACCAGTACCAATTTCCTCAACCTCCACTCCTCCGCCGCCTCTCAATCCTCCTCCCAATGGCCGATGATTGACGACTCCACCATCTCCGGCATGAAAGCGCCGGAGAACGCCGACGCGGCAGCGGAGGGATTAATGAACTGGCAGAAAGCGAAATATAAAGGAGAAATAATGGCGCATCCGTTGTACGAACAGCTTCTATCAGCACACGTGGCGTGTTTGAGAATCGCCACGCCGGTTGACCAGTTGCCGAGAATCGATGCTCAGCTGGCGGAGTCACAGAATGTTGTTGCCAAGTACTCTGCCTTTGTTCAAGGCATGCTTGATGATGATAATAAACAACTCGATCACTTCATGTCGCACTATGTTTTGTTGCTTTGTTCATTCAAAGAACAGCTCCAGCAACATGTCCGGGTCCATGCAATGGAAGCAGTAATGGCTTGTTGGGAGATCGAGCAATCCTTACAAAGTCTAACAGGAGTTTCACCCGGAGAAGGTACTGGAGCAACTATGTCTGAAGATGAAGATGAACAAGTAGACAGTGATACTAATCTGTTTGATGGAAATTTGGATGGTTCAGATAATAGTATGGGAGGATTTGGTCCTCTTGTTCTAACAGAGAATGAGAGGTCCTTAATGGAACGTGTAAGACATGAATTAAAACATGAGTTGAAACAGGATTATAAAGAGAAAATTGTGGACATAAGAGAGGAAATTTTACGAAAGAGACGAGCAGGGAAACTTCCCGGTGACACGACCTCAGTCCTTAAAGATTGGTGGCAATCACATGCAAAGTGGCCTTATCCTACCGAAGAGGATAAGGCAAGGTTGGTACAAGAAACAGGTTTGCAATTGAAACAGATCAATAATTGGTTTATCAATCAAAGGAAGAGAAACTGGCACAGCAATCCTTCAACTTCTAATGTCATGAAAAGCAAGCGCAAGAGGTGA 1101 0.4614 MAYQNHQLSQDHFTPDDSTTKPTSEPHQSFQPAPNWLNTALLRNNSPTTNNTSTNFLNLHSSAASQSSSQWPMIDDSTISGMKAPENADAAAEGLMNWQKAKYKGEIMAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAESQNVVAKYSAFVQGMLDDDNKQLDHFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSEDEDEQVDSDTNLFDGNLDGSDNSMGGFGPLVLTENERSLMERVRHELKHELKQDYKEKIVDIREEILRKRRAGKLPGDTTSVLKDWWQSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSNVMKSKRKR 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03949 366 SUPERFAMILY Homeodomain-like 291 355 IPR009057 -
Vifa2g03949 366 SMART KNOX2_2 154 210 IPR005541 GO:0003677|GO:0005634
Vifa2g03949 366 SMART HOX_1 291 356 IPR001356 GO:0003677
Vifa2g03949 366 FunFam homeobox protein knotted-1-like 3 isoform X1 290 351 - -
Vifa2g03949 366 Coils Coil 275 295 - -
Vifa2g03949 366 MobiDBLite consensus disorder prediction 346 366 - -
Vifa2g03949 366 MobiDBLite consensus disorder prediction 209 230 - -
Vifa2g03949 366 Pfam Homeobox KN domain 309 348 IPR008422 GO:0003677|GO:0006355
Vifa2g03949 366 Gene3D - 290 351 - -
Vifa2g03949 366 Pfam KNOX1 domain 103 144 IPR005540 GO:0003677|GO:0005634
Vifa2g03949 366 CDD homeodomain 292 353 IPR001356 GO:0003677
Vifa2g03949 366 MobiDBLite consensus disorder prediction 1 33 - -
Vifa2g03949 366 ProSiteProfiles 'Homeobox' domain profile. 289 352 IPR001356 GO:0003677
Vifa2g03949 366 SMART ELK_2 269 290 IPR005539 GO:0003677
Vifa2g03949 366 ProSiteProfiles ELK domain profile. 269 289 IPR005539 GO:0003677
Vifa2g03949 366 SMART KNOX1_2 101 145 IPR005540 GO:0003677|GO:0005634
Vifa2g03949 366 Pfam KNOX2 domain 161 209 IPR005541 GO:0003677|GO:0005634
Vifa2g03949 366 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 70 353 - -
Vifa2g03949 366 Pfam ELK domain 269 290 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03949 Vifa-Chr2 1162145139 1162147533 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03949 1 366 Homeobox Transcription Factor Family AT5G25220 63.953 4.39e-176 494
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vifa2g03949 KNOX2 6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03949 - - pvu:PHAVU_009G090500g 533.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03949 2 1162145139 1162147533 Vifa2g03949 2 1162145139 1162147533 ECH