Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03945 ATGGCGAGACCACAGCAGCGATATCGCGGCGTCCGACAAAGGCATTGGGGCTCTTGGGTCTCGGAAATTCGCCATCCCATTTTAAAAACAAGAATCTGGCTTGGAACATTCGAAACAGCGGAGGATGCAGCAAGAGCATACGACGAAGCAGCAAGACTAATGTGTGGAACAAGAGCAAGAACAAACTTTCCTTACAATCCAAACGTGTCTCAATCATCATCTTCCAAGCTTCTCTCAGCAACCTTAACTGCTAAACTTCATAGATGCTACATGGCTTCATTGCAAATCACTCGACCAATATCTCATCAACAACAACCTCAGAGAGAATCTGCACAAGCTCTCACCATTTCCACAAACAATGTTCCAATGAAAAACAGTGAAGAAACTGATGCTACTACTATGAGACATGATGAAGAGGAGAAAAGTTCAGAGGGAAATTGGGTTTTGAAGAAAGTTAAAGTTGAAAATTCTCAGCAATTTTTTAAGCCACTTGAAGAAGATCACATTGAACAAATGATTGAGGAGTTGCTTCATTATGGATCAATTGAGCTTTGTTCTATTATTCCACCACAGTCTCATTGA 582 0.4124 MARPQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCGTRARTNFPYNPNVSQSSSSKLLSATLTAKLHRCYMASLQITRPISHQQQPQRESAQALTISTNNVPMKNSEETDATTMRHDEEEKSSEGNWVLKKVKVENSQQFFKPLEEDHIEQMIEELLHYGSIELCSIIPPQSH 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03945 193 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Vifa2g03945 193 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Vifa2g03945 193 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Vifa2g03945 193 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Vifa2g03945 193 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Vifa2g03945 193 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Vifa2g03945 193 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Vifa2g03945 193 MobiDBLite consensus disorder prediction 122 144 - -
Vifa2g03945 193 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Vifa2g03945 193 MobiDBLite consensus disorder prediction 129 144 - -
Vifa2g03945 193 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 130 - -
Vifa2g03945 193 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03945 Vifa-Chr2 1158321975 1158322686 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03945 1 192 AP2-EREBP Transcription Factor Family AT5G25190 67.188 1.85e-82 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vifa2g03945 AP2 6.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03945 - - gmx:100804510 284.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03945 2 1158321975 1158322686 Vifa2g03945 2 1158321975 1158322686 ECH