Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03940 ATGGAAACACAGAGTCATCAACCACTGCAGAATCCACAAGAAATTGAAAAACACAACACTTATGAAGAAGAAGAAAAAGAGGTAAAACTAAATATTTTATTGGATCTGAATGTTTCTAACAACTATTGTGAGTCCAATCTAGTCACCACAGATGATTCTTCTAAAACTTCTTCAGATAATTACACCCGCGGCTTTGAATCAGAGCCGCGGTTTTTCTCTTGCAACTACTGCAAGAGAAAATTCTATAGTTCACAAGCACTAGGAGGACACCAAAACGCTCACAAGAGGGAAAGGTCTGTTGCAAAAAGAGGACACAAGTTTATAAGAACACACATGATGCTGTCACCAAACGGAACATCCTCATTTTTTCAGAATCATTTTCACCATAAGTATGCAGATATGGCATCTCTACTACCACTTCATGGAGGTGCTAATAGCAATACTCTTAGAGCACTTGGAATTAAGTCTCATTCAATGATTCAGAAGCCTTTTCATAACTTTTCATCCTATGGATTTGGAAACACTTATTATGGATATAATGGTTGGTCAAGACCACTTATTATGAATCAACAACCTGGTATAGGAAAGTTAGCTTTGGAAACTTTCAAGGAAACGGGATTATCATCACATGGAAGTGTTGGTAGATTCAAAGGGGTTGAAGAGGAAATGGTGAATCAAGGAACTCATTTGAATTTGAAGAGTAATCAAGAAGAGGTGAAGAACCTTGACTTATCCTTAAAACTCTAA 747 0.3695 METQSHQPLQNPQEIEKHNTYEEEEKEVKLNILLDLNVSNNYCESNLVTTDDSSKTSSDNYTRGFESEPRFFSCNYCKRKFYSSQALGGHQNAHKRERSVAKRGHKFIRTHMMLSPNGTSSFFQNHFHHKYADMASLLPLHGGANSNTLRALGIKSHSMIQKPFHNFSSYGFGNTYYGYNGWSRPLIMNQQPGIGKLALETFKETGLSSHGSVGRFKGVEEEMVNQGTHLNLKSNQEEVKNLDLSLKL 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03940 248 MobiDBLite consensus disorder prediction 1 15 - -
Vifa2g03940 248 ProSitePatterns Zinc finger C2H2 type domain signature. 74 94 IPR013087 -
Vifa2g03940 248 MobiDBLite consensus disorder prediction 1 22 - -
Vifa2g03940 248 Gene3D Classic Zinc Finger 50 126 - -
Vifa2g03940 248 SUPERFAMILY beta-beta-alpha zinc fingers 69 99 IPR036236 -
Vifa2g03940 248 ProSiteProfiles Zinc finger C2H2 type domain profile. 72 99 IPR013087 -
Vifa2g03940 248 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 6 248 IPR044246 GO:0009788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03940 Vifa-Chr2 1153964026 1153964772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03940 12 248 C2H2 Transcription Factor Family AT5G25160 36.538 2.96e-30 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa2g03940 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03940 - - psat:127087756 392.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04578 3 1312809622 1312810449 Vifa2g03940 2 1153964026 1153964772 PCT