Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03939 ATGGTAATGGATGATTCCACTGATCTCTTTCCCATCGGAATGCGTGTTCTTGCCGTCGACGACGACCCCACTTGCCTCAAAGTCTTGGAAACTCTCCTCCGAAGATGTGAATACCATGTTACCACAACTAGTCAAGCTATAATGGCATTGAATATGCTGAGAGAAAACAAAGACAAGTTTGACTTGGTTATCAGTGATGTGCATATGCCAGATATGGATGGATTTAAGCTGCTTGAACTTGTGGGGCTTGAGATGGACCTTCCTGTCATAATGTTGTCTGCGTATGGTGATACGAAGCTGGTGATGAAGGGGATTTCTCATGGTGCTTGTGATTATCTGCTGAAACCTGTGAGATTAGAGGAGTTAAAGAATATTTGGCAGCATGTGATTAGGAAGAAGAAATCTGATTCAAAGGGGAAAAACAAAACCAGTAAGCCAGATAACGCTACTTCTGATAGTTGCAGCGGACTGAGATCAGCGGGAACTGAGAATTCAGATGAAAATGGAAGGCTGGCTAAGAAAAGGAAGGATCAGGATGAAGATGAAGATGAGGATAAAGAGAATGGTAACGATAATGAAGACCCATCAGCTCAGAAGAAGCCCCGAGTAGTTTGGTCTGTGGAGTTGCACCGCAAGTTTGTCGCTGCTGTAAATCACCTAGGCATTGACAAGGCTGTACCCAAAAAAATTCTTGATATGATGAATGTCGAAAATATTACAAGGGAGAACGTGGCTAGCCATCTCCAGAAGTATAGACTTTATCTGAAAAGAATTAGCTGTGTGGCAAACCAACAAGCTAGTATGGTGGCAGCCTTAGGGAGTGCTGATCAATCTTATTTGAGAATGGGTGGTTCTGGACATTTTCACAATAATGCTTTCAGATCTTTTTCGCCTAGTGGGATCATTAGTAATCTGAACTCTCCGGCTGGTCTGAATGGACACGGATTTTCTCCATCCGGACTACTTCAGTTGGGCCAATCACAAAGTTTAAACAATTCTTCCGGTGATCAATTTAAATTCCAGTCGGCCATAACTCCCGTTAATCAGAATATTCTTCAGGGTATGCCAATGTCTATAGGGTACGATCACTTGCAAAACAGCAAAGGTGCTATTTCTCTTCAAAACATGAATACTGATGTAAAACCAACTTTTCCCATCCCAAGTCAATTCCCGGATCAAAGACCTAGAGTAACTACCTCTAGTTTTCATCCTCCGAGTCTCGGTATCTCAAACAATGCCTTGATGTCAGAAACACGCCCTGAAGGAAAACGAGGTATAGGAATAGGGTATGAAAGTTCATCATCTTCTTCATTAGCCTCTCAACATTCAGAATTTTACCCTGAAGGAAAACGAGGTATAGGAATAGGATATGAAAGTTCATCGTCTTCTTCGTTACCCTCTCAACATTCAGATTTTTCTTTCAGTATGCTGGACCAAGGTAGGCGAACTGATAATTGGTCAAGTGCTGTGCAGTTATCCGGGATCCAGACAAACTCTTTTCCTTCAAGTGAATGCTTTAGACAAACACCTATTCCTCCTTCAGATAACGTGGCTTCTTTGCCCTTGCAAGGGGTGTATCCGGGTGGTCAAACCCATTGTTCATTGGCAGATATGCACTCCCAAGGAGGGATTTTTACTAATCCACCTGAGTATATAAACAGTAATTTACCGTTTCAAGGATGGGAAGACCATAATCAGGATGCTCCTTACCACTCAAATGTTACTTGTGGATCAATTAACTCTCTGCCTCCAGTTAACGGTGCTATCGTTCCCCTAGGCCAAACAACAACGAACTCGACCTTGCACAGAAGCATGGACACTAAGTTTTGTGATTCCATACAAATGAAGCATTCTGGATTCGCTGAATGCTCCACATCAAGACAACCTCGAGCGAATATCGTAAGCCAGCAGCAGTTTTCTAATAATCTCGGTTCATTGGAATACTTGGCAAGTTCAATGATGGAACAGGAGCAAGATAAGATGAAATTATTGGGCGGAGACTTCATATGCGATAGCTACTCTGGCGGGGTATCTTTGTGA 2040 0.426 MVMDDSTDLFPIGMRVLAVDDDPTCLKVLETLLRRCEYHVTTTSQAIMALNMLRENKDKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSAYGDTKLVMKGISHGACDYLLKPVRLEELKNIWQHVIRKKKSDSKGKNKTSKPDNATSDSCSGLRSAGTENSDENGRLAKKRKDQDEDEDEDKENGNDNEDPSAQKKPRVVWSVELHRKFVAAVNHLGIDKAVPKKILDMMNVENITRENVASHLQKYRLYLKRISCVANQQASMVAALGSADQSYLRMGGSGHFHNNAFRSFSPSGIISNLNSPAGLNGHGFSPSGLLQLGQSQSLNNSSGDQFKFQSAITPVNQNILQGMPMSIGYDHLQNSKGAISLQNMNTDVKPTFPIPSQFPDQRPRVTTSSFHPPSLGISNNALMSETRPEGKRGIGIGYESSSSSSLASQHSEFYPEGKRGIGIGYESSSSSSLPSQHSDFSFSMLDQGRRTDNWSSAVQLSGIQTNSFPSSECFRQTPIPPSDNVASLPLQGVYPGGQTHCSLADMHSQGGIFTNPPEYINSNLPFQGWEDHNQDAPYHSNVTCGSINSLPPVNGAIVPLGQTTTNSTLHRSMDTKFCDSIQMKHSGFAECSTSRQPRANIVSQQQFSNNLGSLEYLASSMMEQEQDKMKLLGGDFICDSYSGGVSL 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03939 679 SUPERFAMILY Homeodomain-like 198 257 IPR009057 -
Vifa2g03939 679 MobiDBLite consensus disorder prediction 388 444 - -
Vifa2g03939 679 CDD REC_typeB_ARR-like 16 130 - -
Vifa2g03939 679 Gene3D - 13 149 - -
Vifa2g03939 679 ProSiteProfiles Response regulatory domain profile. 15 130 IPR001789 GO:0000160
Vifa2g03939 679 PIRSF RR_ARR_type-B 1 676 IPR017053 GO:0003677|GO:0003700|GO:0009736
Vifa2g03939 679 NCBIfam myb-like DNA-binding domain, SHAQKYF class 200 253 IPR006447 GO:0003677
Vifa2g03939 679 MobiDBLite consensus disorder prediction 146 166 - -
Vifa2g03939 679 MobiDBLite consensus disorder prediction 429 443 - -
Vifa2g03939 679 Gene3D - 196 259 - -
Vifa2g03939 679 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 197 256 IPR017930 -
Vifa2g03939 679 FunFam Two-component response regulator 196 259 - -
Vifa2g03939 679 PANTHER TWO-COMPONENT RESPONSE REGULATOR 14 367 IPR045279 GO:0009736
Vifa2g03939 679 SMART REC_2 14 126 IPR001789 GO:0000160
Vifa2g03939 679 Pfam Response regulator receiver domain 16 124 IPR001789 GO:0000160
Vifa2g03939 679 Pfam Myb-like DNA-binding domain 202 252 IPR001005 -
Vifa2g03939 679 SUPERFAMILY CheY-like 13 134 IPR011006 -
Vifa2g03939 679 MobiDBLite consensus disorder prediction 167 181 - -
Vifa2g03939 679 MobiDBLite consensus disorder prediction 133 202 - -
Vifa2g03939 679 MobiDBLite consensus disorder prediction 392 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03939 Vifa-Chr2 1152502586 1152505769 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03939 5 385 Response Regulator Gene Family AT2G25180 53.695 1.03e-126 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vifa2g03939 Response_reg 4.5e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03939 - K14491 gmx:100809002 831.247
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03939 2 1152502586 1152505769 Vifa2g03939 2 1152502586 1152505769 ECH
Vifa3g04584 3 1314101827 1314104296 Vifa2g03939 2 1152502586 1152505769 PCT