Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03928 ATGGCCAAGTGTCACCGGAGCAACGTTGATTCACTAGTTCTCGATCACGGCCACCATGCCAAAAACACCACCGCCGAAAACTTCTGCATCTCCGCCTCCTCGATCCGCCGCATCATTTTCGACGCCGTGAGCTGCGGCGGAACTTCCCGGCACCGACATCGCCACCGCGACGAAGTCAACGACGACAAAGAAAAGAAGCATGTTCAAGAAGAGAAGCATGAGAAGCTATTGGATCTCCTGAACAGGCCGGTGCATGCAACGGATGCGGAATTGAAGAAGAAGGAAGAGATGCTGTTAGAGCTGAAGCAAGTGGTGAAGGAATTGCGAGAAGAGGATTCGACTAAACGGCGAATGGCGGCGGCGAGAGTAAGGTTACTGACGAAAGATGATTCTGAAGCGAGAGGCTCACTCGCTATGCTCGGAGCAATTTCTCCTCTCGTTGGAATGCTTGATTCAGAAGACGTTCATTCTCAGATCGATTCTCTTTACGCATTGCTCAATATTGGAATCGGCAATGATGCAAATAAGGCTGCGATTGTAAAAGTTGGTGCTGTTCATAAGATGCTGAAGTTAATTGAATCTCCGCGTGTTGTTGATTCATCGGTTTCTGAGGCGATTGTTGTGAATTTCCTTGGATTGGGTGCTTTGGATTCTAACAAACCAATAATTGGATCCTCTGGTGCAATACCATTCCTTGTTAGAACCCTGCAAAATCTAGATAAAAGTAGTAAAAATTGTTTCCAAGTTAAGCAAGATGCTCTTCGGGCTCTTTACAATCTTTCGATCAATCAGGCCAACATTTTGTTCGTTTTGGAAACTGATTTGGTATTGTTTATGATAAACTCGATTGAAGATATGGAAGTGAGTGAGAGAATCCTTTCAATTCTAAGCAATTTGGTGTCAACTCCAGAAGGTAGAAAAGCTATCAGTGCTGTTAGGGATGGAATCACAGTTTTGGTTGATGTATTGAGTTGGACAGATTCACCTAAATGCCAAGAGAAAGCTTCATACATTTTGATGATCATGGCACACAAAGGCTATGCTGATAGGCAAACCATGATTGAGGCAGGGATTGTATCGGCATTGCTCGAGTTGACGCTTGTAGGTACAGCATTGGCGCAGAAAAGGGCGTCGAGGATATTGGAATGTTTTAGGGTAGACAAAGGGAAGCAGGTTTCTGGGAGATGTGATGGTGGAAACTTAAGCTTAACTGTCTCTGCGCCTATTTGTGCCTCGTCGTTTTCGACGGATGGAGGAGGTAAAGAGTATTTAATGGAGGAGGTGAACATGATGAGTGATGAAAAGAAAGCAGTGAAGCAATTAGTTCAGCAGAGTTTGCAGAACAACATGATGAAAATTGTCAAGAGGGCTAACTTGCGTCACGATTTCGTTCCTTCCGAGTGTTTTGCTTCACTCACATCGAGTTCGACATCAAAGAGCCTTCCATTTTAA 1452 0.4463 MAKCHRSNVDSLVLDHGHHAKNTTAENFCISASSIRRIIFDAVSCGGTSRHRHRHRDEVNDDKEKKHVQEEKHEKLLDLLNRPVHATDAELKKKEEMLLELKQVVKELREEDSTKRRMAAARVRLLTKDDSEARGSLAMLGAISPLVGMLDSEDVHSQIDSLYALLNIGIGNDANKAAIVKVGAVHKMLKLIESPRVVDSSVSEAIVVNFLGLGALDSNKPIIGSSGAIPFLVRTLQNLDKSSKNCFQVKQDALRALYNLSINQANILFVLETDLVLFMINSIEDMEVSERILSILSNLVSTPEGRKAISAVRDGITVLVDVLSWTDSPKCQEKASYILMIMAHKGYADRQTMIEAGIVSALLELTLVGTALAQKRASRILECFRVDKGKQVSGRCDGGNLSLTVSAPICASSFSTDGGGKEYLMEEVNMMSDEKKAVKQLVQQSLQNNMMKIVKRANLRHDFVPSECFASLTSSSTSKSLPF 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03928 483 Coils Coil 91 111 - -
Vifa2g03928 483 Gene3D - 65 244 IPR011989 -
Vifa2g03928 483 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 25 483 - -
Vifa2g03928 483 SMART arm_5 130 170 IPR000225 GO:0005515
Vifa2g03928 483 SMART arm_5 172 215 IPR000225 GO:0005515
Vifa2g03928 483 SMART arm_5 305 344 IPR000225 GO:0005515
Vifa2g03928 483 SMART arm_5 263 301 IPR000225 GO:0005515
Vifa2g03928 483 SMART arm_5 216 262 IPR000225 GO:0005515
Vifa2g03928 483 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 227 266 IPR000225 GO:0005515
Vifa2g03928 483 MobiDBLite consensus disorder prediction 48 69 - -
Vifa2g03928 483 SUPERFAMILY ARM repeat 100 384 IPR016024 -
Vifa2g03928 483 Gene3D - 245 392 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03928 Vifa-Chr2 1146549972 1146551562 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03928 35 385 U-box Gene Family AT2G23140 29.745 3.89e-30 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03928 - - gmx:100796229 592.808