Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03922 ATGGAACCAACGTGCGTTGATACTTCTCTTAACCTCAACCTTGTCCCTTCTCAAGAAACAGACGTTGCTATGGTTGCTAAGGTTTTGGTTGAAGAGTTGGAGCGTTTAAGTAATGAAAATAAGAAGTTAACTGAGAGGTTAAACCTCATGTGCGACAATTATATTGCTTTGCAAAAGCATTTAAACGAGTTCAAGAGTCAAGAATCAGTGACCACGCCGTCGAGGAAGAGAAAGATTGAGTGCACGGAAAGTTGCACCACTACTAAGGAAGAAACATTCAAAGATAACGCTTCTCCAAAAATTTCTAAGGTTCTTGTACGCACAGATGCATCCAACACCAGCTTATATGTGAGAGATGGATATCAGTGGAGAAAATATGGCCAGAAAGTTACTAGAGATAATCCATCTCCTAGGGCTTACTTCAAGTGCTCTTTTGCTCCTTGCTGTCCTGTGAAGAAGAAGGTGCAGAGAAGTGTAGAGGACCCAACAGTATTAGTGACAACATACGAAGGAAAGCACAACCATGCACATCACCAAGGACAAACATCATCGTCAAACCAAAGTGAAACCTCTACGCATGATTTTGTTCCTTCTTCACTAGCTTATGACTTGGTCATGCCGAGAAAATCAGGAGTTGACTATGGTGGTCAAAGGTCGTCTATACACCAGTTGTTAGTTCAGCAACTGACAACTTCTTTGACAAGAGATCATAATTTTAGGACAGCACTTGCCACGGCAATTTCTGGAACTAGTTTGGATGTGCAAAAACGTTGA 774 0.4147 MEPTCVDTSLNLNLVPSQETDVAMVAKVLVEELERLSNENKKLTERLNLMCDNYIALQKHLNEFKSQESVTTPSRKRKIECTESCTTTKEETFKDNASPKISKVLVRTDASNTSLYVRDGYQWRKYGQKVTRDNPSPRAYFKCSFAPCCPVKKKVQRSVEDPTVLVTTYEGKHNHAHHQGQTSSSNQSETSTHDFVPSSLAYDLVMPRKSGVDYGGQRSSIHQLLVQQLTTSLTRDHNFRTALATAISGTSLDVQKR 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03922 257 SUPERFAMILY WRKY DNA-binding domain 114 177 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa2g03922 257 Coils Coil 26 53 - -
Vifa2g03922 257 Pfam WRKY DNA -binding domain 119 175 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa2g03922 257 ProSiteProfiles WRKY domain profile. 112 175 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa2g03922 257 MobiDBLite consensus disorder prediction 172 193 - -
Vifa2g03922 257 Gene3D WRKY domain 100 177 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa2g03922 257 MobiDBLite consensus disorder prediction 178 193 - -
Vifa2g03922 257 SMART WRKY_cls 117 177 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa2g03922 257 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 26 249 IPR044810 GO:0003700
Vifa2g03922 257 FunFam WRKY transcription factor 40 102 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03922 Vifa-Chr2 1144444282 1144445238 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03922 4 249 WRKY Transcription Factor Family AT1G80840 41.837 1.10e-63 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa2g03922 WRKY 5.1e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03922 - - gmx:100127373 277.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04619 3 1322598316 1322599310 Vifa2g03922 2 1144444282 1144445238 PCT