Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa2g03921 | ATGGAACCAACGTGCGTTGATACTTCTCTTAACCTCAACCTTGTCCCTTCTCAAGAAACAGACGTTGCTATGGTTTTGGTTGAAGAGTTGGAGCGTTTAAGTAATGAAAATAAGAAGTTAACTGAGAGGTTAAACCTCATGTGCGACAATTATATTGCTTTGCAAAAGCATTTAAACGAGTTCAAGAGTCAAGAATCAGTGACCACGCCGTCGAGGAAGAGAAAGATTGAGTGCACGGAAAGTTGCACCACTACTAAGGAAGAAACATTCAAAGATAACGCTTCTCCAAAAATTTCTAAGGTTCTTGTACGCACAGATGCATCCAACACCAGCTTATATGTGAGAGATGGATATCAGTGGAGAAAATATGGCCAGAAAGTTACTAGAGATAATCCATCTCCTAGGGCTTACTTCAAGTGCTCTTTTGCTCCTTGCTGTCCTGTGAAGAAGAAGGTGCAGAGAAGTGTAGAGGACCCAACAGTATTAGTGACAACATACGAAGGAAAGCACAACCATGCACATCACCAAGGACAAACATCATCGTCAAACCAAAGTGAAACCTCTACGCATGATTTTGTTCCTTCTTCACTAGCTTATGACTTGGTCATGCCGAGAAAATCAGGAGTTGACTATGGTGGTCAAAGGTCGTCTATACACCAGTTGTTAGTTCAGCAACTGACAACTTCTTTGACAAGAGATCATAATTTTAGGACAGCACTTGCCACGGCAATTTCTGGAACTAGTTTGGATGTGCAAAAACGTTGA | 765 | 0.4144 | MEPTCVDTSLNLNLVPSQETDVAMVLVEELERLSNENKKLTERLNLMCDNYIALQKHLNEFKSQESVTTPSRKRKIECTESCTTTKEETFKDNASPKISKVLVRTDASNTSLYVRDGYQWRKYGQKVTRDNPSPRAYFKCSFAPCCPVKKKVQRSVEDPTVLVTTYEGKHNHAHHQGQTSSSNQSETSTHDFVPSSLAYDLVMPRKSGVDYGGQRSSIHQLLVQQLTTSLTRDHNFRTALATAISGTSLDVQKR | 254 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa2g03921 | 254 | SMART | WRKY_cls | 114 | 174 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Vifa2g03921 | 254 | FunFam | WRKY transcription factor 40 | 99 | 176 | - | - | |
Vifa2g03921 | 254 | PANTHER | WRKY TRANSCRIPTION FACTOR 36-RELATED | 23 | 246 | IPR044810 | GO:0003700 | |
Vifa2g03921 | 254 | ProSiteProfiles | WRKY domain profile. | 109 | 172 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Vifa2g03921 | 254 | Gene3D | WRKY domain | 97 | 174 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Vifa2g03921 | 254 | Coils | Coil | 23 | 50 | - | - | |
Vifa2g03921 | 254 | MobiDBLite | consensus disorder prediction | 169 | 190 | - | - | |
Vifa2g03921 | 254 | SUPERFAMILY | WRKY DNA-binding domain | 111 | 174 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Vifa2g03921 | 254 | MobiDBLite | consensus disorder prediction | 175 | 190 | - | - | |
Vifa2g03921 | 254 | Pfam | WRKY DNA -binding domain | 116 | 172 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa2g03921 | Vifa-Chr2 | 1144444282 | 1144445238 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa2g03921 | 4 | 246 | WRKY Transcription Factor Family | AT1G80840 | 41.837 | 4.28e-64 | 200 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | WRKY | Vifa2g03921 | WRKY | 5e-23 | CL0274 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa2g03921 | - | - | gmx:100127373 | 276.174 |