Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03921 ATGGAACCAACGTGCGTTGATACTTCTCTTAACCTCAACCTTGTCCCTTCTCAAGAAACAGACGTTGCTATGGTTTTGGTTGAAGAGTTGGAGCGTTTAAGTAATGAAAATAAGAAGTTAACTGAGAGGTTAAACCTCATGTGCGACAATTATATTGCTTTGCAAAAGCATTTAAACGAGTTCAAGAGTCAAGAATCAGTGACCACGCCGTCGAGGAAGAGAAAGATTGAGTGCACGGAAAGTTGCACCACTACTAAGGAAGAAACATTCAAAGATAACGCTTCTCCAAAAATTTCTAAGGTTCTTGTACGCACAGATGCATCCAACACCAGCTTATATGTGAGAGATGGATATCAGTGGAGAAAATATGGCCAGAAAGTTACTAGAGATAATCCATCTCCTAGGGCTTACTTCAAGTGCTCTTTTGCTCCTTGCTGTCCTGTGAAGAAGAAGGTGCAGAGAAGTGTAGAGGACCCAACAGTATTAGTGACAACATACGAAGGAAAGCACAACCATGCACATCACCAAGGACAAACATCATCGTCAAACCAAAGTGAAACCTCTACGCATGATTTTGTTCCTTCTTCACTAGCTTATGACTTGGTCATGCCGAGAAAATCAGGAGTTGACTATGGTGGTCAAAGGTCGTCTATACACCAGTTGTTAGTTCAGCAACTGACAACTTCTTTGACAAGAGATCATAATTTTAGGACAGCACTTGCCACGGCAATTTCTGGAACTAGTTTGGATGTGCAAAAACGTTGA 765 0.4144 MEPTCVDTSLNLNLVPSQETDVAMVLVEELERLSNENKKLTERLNLMCDNYIALQKHLNEFKSQESVTTPSRKRKIECTESCTTTKEETFKDNASPKISKVLVRTDASNTSLYVRDGYQWRKYGQKVTRDNPSPRAYFKCSFAPCCPVKKKVQRSVEDPTVLVTTYEGKHNHAHHQGQTSSSNQSETSTHDFVPSSLAYDLVMPRKSGVDYGGQRSSIHQLLVQQLTTSLTRDHNFRTALATAISGTSLDVQKR 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03921 254 SMART WRKY_cls 114 174 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa2g03921 254 FunFam WRKY transcription factor 40 99 176 - -
Vifa2g03921 254 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 23 246 IPR044810 GO:0003700
Vifa2g03921 254 ProSiteProfiles WRKY domain profile. 109 172 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa2g03921 254 Gene3D WRKY domain 97 174 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa2g03921 254 Coils Coil 23 50 - -
Vifa2g03921 254 MobiDBLite consensus disorder prediction 169 190 - -
Vifa2g03921 254 SUPERFAMILY WRKY DNA-binding domain 111 174 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa2g03921 254 MobiDBLite consensus disorder prediction 175 190 - -
Vifa2g03921 254 Pfam WRKY DNA -binding domain 116 172 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03921 Vifa-Chr2 1144444282 1144445238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03921 4 246 WRKY Transcription Factor Family AT1G80840 41.837 4.28e-64 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa2g03921 WRKY 5e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03921 - - gmx:100127373 276.174