Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03910 ATGGGGATTTATCTTAGTACTCCTAAAACTGAGAAATTTTCTGAAGATGGAGAAAGTGATAATCTTAGATATGGTTTATCGTCAATGCAAGGATGGCGTGCAACAATGGAAGATGCTCATGCTGCATATACTGATCTGGATGAGTCTACTTCATTTTTCGGTGTTTATGATGGTCATGGAGGTAAGGTGGTTGCAAAGTTTTGTGCTAAGTTTCTTCATCAACAGATGCTCAAGAGTGAAGCATACTTAGCTGGGGATATTGGAACCTCTCTTCAAGAATCATTTTTAAGAATGGATGAGATGATGCGTGGTCAAAGAGGATGGAGGGAGCTATCAATCTTGGGAGATAAGATAAACAAATTTACTGGAATGATAGAAGGGTTGATTTGGTCTCCACGAAGCAGCAATGGTATTAGCAGAGTTGATGATTGGGCTTTTGAGGAGGGGCCTCATTCTGATTTTGTTGGACCAACTTCAGGAAGCACAGCCTGTGTTGCAGTTATTAGAAACAACCAACTTCTTGTGGCAAATGCTGGTGATTCACGTTGTGTAATATCTCGGAAGGGACAGGCATACAATTTATCTAGAGACCACAAGCCTGACCTTGAGATTGAGAAGGAAAGAATTTCAAAAGCTGGTGGTTTTATTCATGCAGGAAGAGTAAATGGTAGTTTAAACCTTACAAGAGCTATAGGTGACATGGAATTTAAACAAAACAAATTTCTTCCTGCTGAAAAACAAGTTGTAACTGCCAATCCAGATATTAACACTGTTGAGCTTTGTGATGAAGATGAATTTATGGTTCTAGCTTGTGATGGCATATGGGACTGCTTGTCAAGTCAACAATTAGTAGATTTTGTTCATGAACAACTGTGTTCGGAAACAAAACTTTCCACTGTGTGTGAAAGAGTATTTGACCGATGTTTGGCACCATCAACTGCTGGTGGTGAAGGATGTGATAACATGACAATGATCTTGGTCCAGTTCAAAAAACCTTCTCAGTCCAGTGCACCAGCAGAAGAGCAGTCCTCATCAAATGAACAAGCTGAATCACAAGTTGAACCAAAACTTGAAAGAAGTGAAGTTTAG 1089 0.3967 MGIYLSTPKTEKFSEDGESDNLRYGLSSMQGWRATMEDAHAAYTDLDESTSFFGVYDGHGGKVVAKFCAKFLHQQMLKSEAYLAGDIGTSLQESFLRMDEMMRGQRGWRELSILGDKINKFTGMIEGLIWSPRSSNGISRVDDWAFEEGPHSDFVGPTSGSTACVAVIRNNQLLVANAGDSRCVISRKGQAYNLSRDHKPDLEIEKERISKAGGFIHAGRVNGSLNLTRAIGDMEFKQNKFLPAEKQVVTANPDINTVELCDEDEFMVLACDGIWDCLSSQQLVDFVHEQLCSETKLSTVCERVFDRCLAPSTAGGEGCDNMTMILVQFKKPSQSSAPAEEQSSSNEQAESQVEPKLERSEV 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03910 362 ProSitePatterns PPM-type phosphatase domain signature. 52 60 IPR000222 GO:0043169
Vifa2g03910 362 Gene3D - 1 330 IPR036457 -
Vifa2g03910 362 SMART PP2C_4 13 327 IPR001932 -
Vifa2g03910 362 ProSiteProfiles PPM-type phosphatase domain profile. 23 329 IPR001932 -
Vifa2g03910 362 Pfam Protein phosphatase 2C 23 104 IPR001932 -
Vifa2g03910 362 Pfam Protein phosphatase 2C 156 313 IPR001932 -
Vifa2g03910 362 CDD PP2Cc 23 329 IPR001932 -
Vifa2g03910 362 SUPERFAMILY PP2C-like 3 331 IPR036457 -
Vifa2g03910 362 PANTHER PROTEIN PHOSPHATASE 2C 20 328 IPR015655 GO:0004722|GO:0006470
Vifa2g03910 362 MobiDBLite consensus disorder prediction 330 362 - -
Vifa2g03910 362 SMART PP2C_SIG_2 28 329 IPR001932 -
Vifa2g03910 362 MobiDBLite consensus disorder prediction 330 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03910 Vifa-Chr2 1141361231 1141366263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03910 1 341 PP2C-type Phosphatase Gene Family AT2G25070 76.833 0.0 580
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03910 K17499 - gmx:100787778 625.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03910 2 1141361231 1141366263 Vifa2g03910 2 1141361231 1141366263 ECH
Vifa3g04599 3 1317425083 1317427828 Vifa2g03910 2 1141361231 1141366263 PCT