Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03898 ATGGGATATCTCAATTCAGTTTTGTCCTCTTCAAGTCAGGTTCGTGCCATGGATGATGCACCTGTTAGCGGTGGTGGTCTCAGTCACAATGGAAAATTCAGCTATGGGTATGCTAGCTCGCCCGGCAAGAGATCTTCAATGGAAGATTTTTATGAGACAAGAATTGATGGTGTTGATGGTGAAATCGTTGGCCTTTTCGGAGTTTTTGATGGTCATGGCGGTATTCGTGCGGCTGAGTATGTTAAGAAAAACCTGTTTAGTAATTTGATCAGTCACCCGAAATTCATTTCTGACACCAAATCAGCCATATCTGATGCATATAATCATACCGATTCGGAATATCTGAAATCCGAAAACAATCATCACAAAGATGCAGGATCTACTGCATCTACTGCCATTCTTGTTGGTGATCGTTTGCTTGTTGCAAATGTTGGAGACTCCAGGGCTGTTATATGCAGGGGTGGTACTGCATATGCTGTTTCTCGAGATCATAAGCCAGACCAAACTGATGAGAGGCAAAGGATTGAAGATGCAGGAGGCTTTGTTATGTGGGCTGGAACTTGGAGAGTTGGAGGTGTTCTGGCTGTTTCTCGTGCATTTGGCGATAGACTCTTGAAGCAGTATGTTGTTGCTGATCCTGAAATCCAGGAAGAAAAAGTTGACAGTTCTCTTGAGTTTCTTATTCTGGCCAGTGATGGGCTATGGGACGTCGTCACAAACGAGGAAGCCGTTGCTATGATTAAACCACTTGAGGATGCAGAGGAGGCGGCAAAGAGACTGATGCAAGAAGCATATCAGAGAGGCAGCGCTGACAATATCACTTGCGTTGTCGTTCGTTTCTTGATGAACCAAGGCTCCTCTTCTCATACTAGCTCTGTAATTAACCGTCCTTAG 894 0.4452 MGYLNSVLSSSSQVRAMDDAPVSGGGLSHNGKFSYGYASSPGKRSSMEDFYETRIDGVDGEIVGLFGVFDGHGGIRAAEYVKKNLFSNLISHPKFISDTKSAISDAYNHTDSEYLKSENNHHKDAGSTASTAILVGDRLLVANVGDSRAVICRGGTAYAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKVDSSLEFLILASDGLWDVVTNEEAVAMIKPLEDAEEAAKRLMQEAYQRGSADNITCVVVRFLMNQGSSSHTSSVINRP 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03898 297 FunFam probable protein phosphatase 2C 59 26 284 - -
Vifa2g03898 297 CDD PP2Cc 33 280 IPR001932 -
Vifa2g03898 297 Gene3D - 26 285 IPR036457 -
Vifa2g03898 297 PANTHER PROTEIN PHOSPHATASE 25 279 IPR015655 GO:0004722|GO:0006470
Vifa2g03898 297 SUPERFAMILY PP2C-like 29 280 IPR036457 -
Vifa2g03898 297 ProSitePatterns PPM-type phosphatase domain signature. 65 73 IPR000222 GO:0043169
Vifa2g03898 297 SMART PP2C_4 24 278 IPR001932 -
Vifa2g03898 297 ProSiteProfiles PPM-type phosphatase domain profile. 34 280 IPR001932 -
Vifa2g03898 297 SMART PP2C_SIG_2 29 280 IPR001932 -
Vifa2g03898 297 Pfam Protein phosphatase 2C 63 273 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03898 Vifa-Chr2 1139371885 1139374008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03898 1 293 PP2C-type Phosphatase Gene Family AT4G31750 87.031 0.0 520
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03898 K17506 - gmx:100795017 540.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03898 2 1139371885 1139374008 Vifa2g03898 2 1139371885 1139374008 ECH