Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03895 ATGTCTTCCAAACTCTGCGACTCATGCCAATCCGCCGCCGCGACTCTATACTGCCGCCCTGACTCCGCCTTCCTCTGCGCCGCATGCGACTCCGAAGTCCACGCCGCTAACAAACTCGCCTCCCGTCACCCTCGCGTTACTCTATGCGAAGTCTGCGAGCAAGCACCTGCACACGTCACCTGTAAAGCCGACGCCGCCGCTCTCTGCATATCCTGCGACCGTGACATCCATTCCGCCAATCCCCTCGCCGCTCGCCATGAGCGTCTTCCTATTACTCCTCTCTTCGAATCCACCACTTCTCAAAATGAGAAATCGATTCACAATATCAACCACTACGATGATTCTGTTAAAGATGAGGCTGAAGCTGCTTCATGGTTGCTCACCGATCCTAAGGCGGATCTCAATTCATCTTCTTACATTTTCTCAGATTCCGAAGCTATTCCGTTTATGGATCTTGATTACGGTGTTATTGAACATAAAAACGTCGACGGTGTGGTTCCAGATCACGGTAACTTTGATCTTTTCGCTTATGCTTTCAAAAACAACAACGTGCAGTCACACACGGAGGTAGAGACACCGACGCCGTCACAGTCGCAGATTAGTCACAGTGTGGTGTCATCGTCGATGGAGGTCGGAGTTGTTCCCGACGGAGACGCTGTATCGGAAATTTCGAACAGCGGACACAGCAAGGCGATGGCGGCGGATCGTGAAGCCAAGGTAATGAGGTATAGGGAGAAGAGGAAGAATCGAAGGTTCGAGAAGACGATTCGTTACGCTTCTCGTAAGGCTTATGCAGAAACTAGGCCAAGGATCAAAGGACGGTTTGCGAAACGTACCGGTGCCGTTGATTCTATTGGTGGATACGGCATTGTTCCCACTTACTGA 885 0.5119 MSSKLCDSCQSAAATLYCRPDSAFLCAACDSEVHAANKLASRHPRVTLCEVCEQAPAHVTCKADAAALCISCDRDIHSANPLAARHERLPITPLFESTTSQNEKSIHNINHYDDSVKDEAEAASWLLTDPKADLNSSSYIFSDSEAIPFMDLDYGVIEHKNVDGVVPDHGNFDLFAYAFKNNNVQSHTEVETPTPSQSQISHSVVSSSMEVGVVPDGDAVSEISNSGHSKAMAADREAKVMRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRTGAVDSIGGYGIVPTY 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03895 294 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Vifa2g03895 294 CDD Bbox1_BBX-like 5 48 - -
Vifa2g03895 294 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 6 280 IPR045281 GO:0009909
Vifa2g03895 294 Pfam CCT motif 236 278 IPR010402 GO:0005515
Vifa2g03895 294 SMART bboxneu5 49 91 IPR000315 GO:0008270
Vifa2g03895 294 SMART bboxneu5 1 48 IPR000315 GO:0008270
Vifa2g03895 294 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Vifa2g03895 294 CDD Bbox1_BBX-like 48 91 - -
Vifa2g03895 294 ProSiteProfiles CCT domain profile. 236 278 IPR010402 GO:0005515
Vifa2g03895 294 Pfam B-box zinc finger 4 47 IPR000315 GO:0008270
Vifa2g03895 294 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03895 Vifa-Chr2 1138492474 1138493453 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03895 1 294 C2C2-CO-like Transcription Factor Family AT5G24930 48.780 7.16e-94 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Vifa2g03895 zf-B_box 2.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03895 - - gmx:100804201 380.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03895 2 1138492474 1138493453 Vifa2g03895 2 1138492474 1138493453 ECH