Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03893 ATGCCTTATATTTACAACGCTCTGATAGTTCAAGGTCGAGATACGGTTGGCCAACAAATTAACGTAACGTGTGAAGTACAACAATTATTAGGAAATAATAGAATTAGAGCTGTAGCTATGAGTGCTACAGATGGTCTAAATAGAGGAATGGAAGTGATTGACACGGGAGTTGCTCTAAGTGTTCCAGTCGGTGGAGCAACCCTAGGTCGAATTTTCAACGTGCTTGGAGAGCCTATTGATAATTTGGGTCCTGTAGATACTCGCACAACATCTCCTATTCATAGATCTGCGCCTGCCTTTATACAGTTAGATACACAATTATCCATTTTTGAAACAGGAATTAAAGTAGTTGATCTTTTAGCTCCTTATCGCCGTGGCGGAAAAATAGGACTTTTCGGTGGAGCTGGGGTAGGTAAAACAGTTCTCATTATGGAATTGATCAATAACATTGCCAAAGCTCATGGAGGTGTATCCGTATTTGGCGGAGTAGGTGAGCGTACTCGTGAGGGAAATGATCTTTATATGGAAATGAAAGAATCCGGAGTAATTAATGAAAAAAATATTGCGGAATCAAAAGTAGCTCTAGTCTACGGTCAAATGAATGAACCGCCCGGAGCTCGTATGAGAGTTGGTTTAACTGCCCTAACTATGGCAGAATATTTCCGAGATGTCAATGAGCAGGACGTCCTTCTATTTATCGATAATATCTTCCGTTTTGTCCAAGCCGGATCCGAAGTATCCGCCTTATTGGGCCGAATGCCTTCCGCTGTGGGTTATCAACCCACCCTGGGTACTGAAATGGGTACTTTACAAGAAAGAATTACTTCTACCAAAGAAGGGTCTATAACTTCTATTCAAGCAGTTTATGTACCTGCAGACGATTTGACTGATCCTGCTCCTGCCACGACATTTGCACATTTGGATGCAACTACTGTACTATCAAGAGGATTAGCTGCCAAAGGTATTTATCCAGCAGTAGATCCTTTAGATTCAACGTCAACCATGCTCCAACCTCGCATCGTCGGTGAAGAACATTATGAAACTGCGCAAAGAGTGAAACAAACGTTACAACGTTACAAAGAACTTCAGGACATTATAGCTATTCTTGGGTTGGACGAATTATCCGAAGAGGATCGCTTAACCGTAGCAAGAGCACGAAAAATTGAACGTTTCTTATCACAACCTTTTTTCGTAGCAGAAGTATTTACCGGTTCGAAGAAGTTTAATTCATATATACTTTATGAAATGGTTTAA 1254 0.4099 MPYIYNALIVQGRDTVGQQINVTCEVQQLLGNNRIRAVAMSATDGLNRGMEVIDTGVALSVPVGGATLGRIFNVLGEPIDNLGPVDTRTTSPIHRSAPAFIQLDTQLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEKNIAESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLGTEMGTLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSKKFNSYILYEMV 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03893 417 FunFam ATP synthase subunit beta 59 335 - -
Vifa2g03893 417 ProSitePatterns ATP synthase alpha and beta subunits signature. 324 333 IPR020003 GO:0005524
Vifa2g03893 417 CDD ATP-synt_F1_beta_C 340 406 - -
Vifa2g03893 417 SMART AAA_5 125 317 IPR003593 GO:0016887
Vifa2g03893 417 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 336 405 - -
Vifa2g03893 417 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 1 56 IPR036121 GO:0046034|GO:1902600
Vifa2g03893 417 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 113 333 IPR000194 GO:0005524
Vifa2g03893 417 Pfam ATP synthase alpha/beta family, beta-barrel domain 2 56 IPR004100 GO:0046034|GO:1902600
Vifa2g03893 417 Gene3D - 59 335 IPR027417 -
Vifa2g03893 417 Gene3D - 1 57 - -
Vifa2g03893 417 PANTHER ATP SYNTHASE 1 406 - -
Vifa2g03893 417 NCBIfam F0F1 ATP synthase subunit beta 1 406 IPR005722 GO:0015986|GO:0045261|GO:0046933
Vifa2g03893 417 Gene3D - 336 411 IPR024034 -
Vifa2g03893 417 CDD ATP-synt_F1_beta_N 1 56 - -
Vifa2g03893 417 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 60 338 IPR027417 -
Vifa2g03893 417 Hamap ATP synthase subunit beta [atpB]. 1 416 IPR005722 GO:0015986|GO:0045261|GO:0046933
Vifa2g03893 417 CDD F1-ATPase_beta_CD 60 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03893 Vifa-Chr2 1138413970 1138415223 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03893 47 390 Primary Pumps ATPases(2) AT1G20260 27.273 3.32e-28 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03893 K02112 - vvi:4025008 769.615