Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03887 ATGGGTGGAACGGCAGAGATTAGTAACGATAGTATTGTAGTGAAAGTTGGAGCAGTACTTGATATTAGCAACGGAACAGTTGGGAAGATAGGATTGAGCTGCATCAACATGGCCCTATCAGATTTCTATTTATCTCATTCTCACTACAAAACTAGAATCCAAATCATCGTCAGGGATTCTCATAGAGACGTCGTCAATGCAGCTGCACATGCTTTGGATCTTATAAAAAATGTGAAAGTACAAGCAATCATGGGACCAACAACAACAATGGAAGCAAATTTTGTGATTCAACTAGGAGACAAAGCTCACGTGCCCATTGTTACATTTTCTGCTACAAGCCCTTCACTTGCATCACTTCAAAGTCCATATTTTTTCCAAATATCACAAACCGATTCAGCTCAACTAAAAGCCATCACCACAATCATTCAAGCTTTTGGTTGGAAACAAGTGGTCCCTATTTATGTTGACAATAGTTTTGGTGAAGGACTCATTCCTTATCTAACCAATGTTCTTCAACAAGAGAATATTCAAGTTCCTTATCTTAGTGCAATTTCTCTTTCAGCCACAGATGATGCCATTACTCAAGAGCTTTACAAAATAATTACTACTATTCCAACAAGAGTGTTTGTTGTGCACATGTCAACAACTATTGGATCTAAACTTTTTACCATAGCAAAAAAAATTGGGATAATGAGTCAAGGCTATGTTTGGATAGTAACTGATAGTATGGCTAATCTATTCAATTCATTGAGTTTAGATGTCTGGGAATCAATGGAAGGAGTAATTGGTGTTAGGACTTATATTCCAAGAACAAAAAAGCTAGATGATTTTAGAGTTAGATGGAAACGAAAATTCATGAGTGATAATCCAACTCTTGTTGACACATATTTGAATATTTTTGGAATATGGGCTTATGATGCAACAATTGCATTAGCAATGGCTATTGAGAAAGCTGGAATTGGAATCACAAAATTTGGTTACAATGAGAGCAACACATCAAGCAATTATTACATATCTGAATTTGAAAGGTTTGGTATTGCACAAAATGGTGTGAAATTGAGTGAAGCTTTGTTAAACACTAGATTTAGTGGTCTTAGTGGTGATTTTAATGTTTCCGATGGGAAGTTACAAGCTTCGACGTATGAGATAATTAATGTGATTGGTAATGGTGAAAAGAGGGTTGGATTTTGGACACCATATAAGGGTTTGGCTAGAAATTTGGATACAAAAGACAGAAACAATGGTACATATTCTAGTTCTAAAAATGATCTTGCAACTATCATATGGCCAGGGGATATGTACTCTATTCCAAAGGGATGGGAAGTTCCAACTATTATTGGGAAGAAATTGAGGATAGGAGTTCCTGTAAAAAATGGAAATAACTACACTGAATTTTTGAAAGTAACACATGATTATGACACTAATTCAACACAAGCCACTGGCTTCTGCATTGCCGTCTTCAAAGCTGCGGTGGAAGCGTTGTCTTATCCTTTACCACAATATGAATTTGTTGCATTTGCAAAGCCTGATGGGGAGATGGCAGGAACATACGACGAGTTGATCAGTGAACTTTATTACGGGAAGTATGATGCGGTGGTGGGGGATATAACGATCATTTCAAACAGATCCAACTATGTTGATTTCACCATGCCGTACACAGAATCTGGAGTGACAATGATTGTTTCAATGAAAGACAGCAGGAAGAAAAATGCATGGGCCTTTTTGAAGCCATTGACATGGCAACTTTGGGTAACAACAACTTGTTCATTTGTATTCATTGGATTCGTTGTTTGGGTTCTTGAACATAGAATCAACAACGATTTCAGAGGACCACCCTCCCATCAAATTGGCACAAGCCTATGGTTTTCCTTCTCAACTATGGTTTATGCTCATAGAGAGAAAGTGGTGAGCAACTTGGCTAGATTTGTGGTGGTCGTATGGGTTTTTGTGGTTCTAATTCTGGTTCAAAGTTACACTGCAAGTTTGACTTCACTCTTAACTGTTGAACAACTAAGCCCAACTATTACAGATGTTAACCAACTTCTAAAGAATAAGATGAATGTTGGCTATCTCAAAGGCTCTTTTGTTTACGGAATCTTGAAAGGCTTACAATTTCAAGATTCTCAGCTCATTCCTTATCAGTCAGCTGAAGAATGTAATGAGCTTTTCATGAAAGGAAGTGTAAATGGTGGCATTGATGCTGCTTTTGATGAAGTTCCCTATGTTAAGCACTTTCTTGGAATTTATAGTTGTTCAAAGTATGTCATGGTTGAACCAAGATTTAAAACTGGCGGTTTCGGCTATGCGTTCCCAAAAGGTTCACCTCTTGTACCAGACATTTCAAGGGCAATCCTAAATGTGACACAAGGAGAGAAAATGAAAACAATTGAGAATGCATGGTTCAAAGAGCATAGTTGTCAAGATTCTAATACAGAAATCTCCACTAATAACAGTCTTGGACTTGAAAGCTTTTGGGGCCTATTTCTCATTGCAGGGATTGCTTCCCTATTAGCACTCCTAATATTTTTTGTCACATTTCTACATCAGCACAAACATATTTGGTTAAACAATGATCCAAATGCTTCAATATGGCAACGAATTCGAGTCTTGGTAAGGATATTTGATCAAAGAGACTTGAACTGTCACAACACATTCAAGAAAAGTGAAAGGATTGTTAGTCCTCCTCATGATGATTTAGGTTCAGTGGAGGCTTCTCCAGGTACACATTGTCCACCTAGTCCATCTAGTCAAACTGAGTCAGTTGTTTCGGTTTACTGCGATTTTAGTGCCGACCATGGTCAAAACACAGAAATGGATGTTGTACAGAATACTAATCCAGAAGTTGAACCTGTGAACAACATGGCAACATCTATAATTGTAACATCAAGCTCTTAA 2895 0.3755 MGGTAEISNDSIVVKVGAVLDISNGTVGKIGLSCINMALSDFYLSHSHYKTRIQIIVRDSHRDVVNAAAHALDLIKNVKVQAIMGPTTTMEANFVIQLGDKAHVPIVTFSATSPSLASLQSPYFFQISQTDSAQLKAITTIIQAFGWKQVVPIYVDNSFGEGLIPYLTNVLQQENIQVPYLSAISLSATDDAITQELYKIITTIPTRVFVVHMSTTIGSKLFTIAKKIGIMSQGYVWIVTDSMANLFNSLSLDVWESMEGVIGVRTYIPRTKKLDDFRVRWKRKFMSDNPTLVDTYLNIFGIWAYDATIALAMAIEKAGIGITKFGYNESNTSSNYYISEFERFGIAQNGVKLSEALLNTRFSGLSGDFNVSDGKLQASTYEIINVIGNGEKRVGFWTPYKGLARNLDTKDRNNGTYSSSKNDLATIIWPGDMYSIPKGWEVPTIIGKKLRIGVPVKNGNNYTEFLKVTHDYDTNSTQATGFCIAVFKAAVEALSYPLPQYEFVAFAKPDGEMAGTYDELISELYYGKYDAVVGDITIISNRSNYVDFTMPYTESGVTMIVSMKDSRKKNAWAFLKPLTWQLWVTTTCSFVFIGFVVWVLEHRINNDFRGPPSHQIGTSLWFSFSTMVYAHREKVVSNLARFVVVVWVFVVLILVQSYTASLTSLLTVEQLSPTITDVNQLLKNKMNVGYLKGSFVYGILKGLQFQDSQLIPYQSAEECNELFMKGSVNGGIDAAFDEVPYVKHFLGIYSCSKYVMVEPRFKTGGFGYAFPKGSPLVPDISRAILNVTQGEKMKTIENAWFKEHSCQDSNTEISTNNSLGLESFWGLFLIAGIASLLALLIFFVTFLHQHKHIWLNNDPNASIWQRIRVLVRIFDQRDLNCHNTFKKSERIVSPPHDDLGSVEASPGTHCPPSPSSQTESVVSVYCDFSADHGQNTEMDVVQNTNPEVEPVNNMATSIIVTSSS 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03887 964 CDD GluR_Plant 448 801 - -
Vifa2g03887 964 FunFam Glutamate receptor 449 571 - -
Vifa2g03887 964 CDD PBP1_GABAb_receptor_plant 15 407 IPR044440 -
Vifa2g03887 964 Gene3D - 571 707 - -
Vifa2g03887 964 Pfam Ligand-gated ion channel 803 834 IPR001320 GO:0015276|GO:0016020
Vifa2g03887 964 FunFam Glutamate receptor 346 447 - -
Vifa2g03887 964 SUPERFAMILY Periplasmic binding protein-like II 425 803 - -
Vifa2g03887 964 Gene3D - 342 449 - -
Vifa2g03887 964 FunFam Glutamate receptor 571 701 - -
Vifa2g03887 964 FunFam Glutamate receptor 2.7 708 808 - -
Vifa2g03887 964 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 14 880 IPR015683 -
Vifa2g03887 964 SMART GluR_14 451 803 IPR001320 GO:0015276|GO:0016020
Vifa2g03887 964 FunFam Glutamate receptor 130 286 - -
Vifa2g03887 964 PIRSF IGluLR_plant 3 927 IPR017103 -
Vifa2g03887 964 Gene3D - 726 808 - -
Vifa2g03887 964 Pfam Receptor family ligand binding region 34 388 IPR001828 -
Vifa2g03887 964 Gene3D - 132 297 - -
Vifa2g03887 964 SUPERFAMILY Periplasmic binding protein-like I 13 440 IPR028082 -
Vifa2g03887 964 Pfam Bacterial extracellular solute-binding proteins, family 3 473 802 IPR001638 -
Vifa2g03887 964 MobiDBLite consensus disorder prediction 896 918 - -
Vifa2g03887 964 Gene3D - 450 570 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03887 Vifa-Chr2 1136118760 1136129318 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03887 9 919 Ion Channels AT2G29120 49.783 0.0 865
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03887 K05387 - tcc:18587654 1074.69