Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03886 ATGGAGAAAGAGTGTGTTGATGATGTTATGGAAATTGAAGTCCTTCCTTCAATGTGGCCAGAAGATATTGCAATGGATGTTGGAAAACAGTTCAATATCGAAAAACCCGGAAATGACCAAGGTGTGTTAGAAGAGATTACAATCATAGAAGAACCAACTATAGCCGATTTCAAGCGTCTCATGGAGCTAACAAATTTCACCGAAAAAGGTTCTTCTCAATTAGCCAACCTTATGAAACACTGGGAGTATAAACAAGCCAACGTCGCGCGTCTTCTAAGAGAAGAACTCGACAATCTAAACAAACAACGAAAGGATGTTGAGTTAAGGAAGTTGGAGATACTGGAAGAGCATAGGTTCGAGGAAGAAAGATATGGAGGCGATAAACGGCCGGTTTCTATATTGGATGATGTTTATGATATATGGCAACAAGATCAAGACATACCTTGTAGAAAAAGTGATGTTGTGGTTCAAAACAAGAGAATTGAAATTGATGCCGAGTATGATACGGTTGTGTACTGGAAACAGCGAGCCGCGCACTTGGAAAAGCTTCTGGAGGCAAGTATGATGAGAGAAGAGTCTCTTGAACAGAAGTTGCAAGAGAGTATTAAGAACTTTGAGAGACAATCATCACCTGTTGAAGAACTCTCTCAGATTTTGAAGAGAGCAGATAATTTCTTGCATTTTATACTCCAAAATGCTCCGGTTGTTATTGGCCATCAGGACAAAGAGTTGCGATATCGCTTTATCTATAATCACTTTCCTAGTTTGCAAGAGGAGGACATCATAGGAAAAACGGATGTTGAAATATTCACTGGATCTGGTGTTAGGGAGTCTCAAGATTTTAAGATGGAAGTTTTAGAAAAAGGATTGCCTGCCAAAAGGGAAATCACTTTCGAGACAGAACTTTTTGGCTCGAAGACATTCTTGATTTATGTAGAACCTGTCTTCAGCAAGACAGGAGAAACAATTGGAATCAATTACATGGGAATGGATGTAACAGATCAGGTGAGAAAAAGAGAAAGAATGGCGAAGATTCGCGAAGAGATAGCTGTTCAAAAAGCGAAGGAAACAGAACTGAATAAAACCATTCACATCACAGAGGAAACTATGAGAGCAAAACAAGTTCTGGCAACAATGTCACATGAGATAAGATCTCCACTGTCTGGTGTTGTTAGCATGGCTGAAATTCTTTCCACCACAAAGCTTGATAGGGAACAACGACAGCTCTTGGATGTCATGTTATCGTCCGGAGACTTGGTTCTTCAACTTATAAATGACATACTTGATCTTTCCAAGGTTGAGTCAGGAGTAATGAAGTTGGAGGCTACAAAATTTCGACCGCGAGAGGTAGTAAAGCACGTGCTTCAGACAGCTGCAGCATCATTGCAGAAAATATTAACCTTAGAAGGACATGTAGCAGATGATGTGCCTATCGAGGTTACTGGCGATGTATTAAGGATTAGACAAATCCTCACAAATTTAATCAGCAACGCCATCAAGTTTACACATGAAGGCAAAGTTGGGATAAACCTTTATGTTATGCAAGAGCCAATTTTTTCAAAAGCTGAAAGCATACAAAAGATTACATCATGCCAATCAACCATTTCTCTAAATGTAATGAAAGAAGAAAAATATCTCTCAACACCTCAAAACGAATGCTCGATGAATGGAGATAAGGAGGATCAACATCACTCAGCTGAAACAAGCGTGTGGATAGGTTGTGATGTATATGATACAGGCATTGGAATACCAGAAAATGCAAAACATAGTTTATTTAAAAGGTACATGCAAGTCAGTGTAGACCACGCACGAAAGTACGGTGGTACAGGGCTAGGACTAGCAATATGCAAACAATTGGTTGAGTTGATGGGGGGTAATCTAACAGTGTCTAGCAAAGAACAGCATGGTTCTACTTTCACATTCATTCTGCCATACAAGGTCTCAATTGCTTGTGATAGTTCTGATTACTCCGATGAATTCTCAGACATGGAGCATAACGAAGCCGCTTCTGATGATACAACAACAGAAGGTTTCTTCCAATTCCACACAAACCGAACTCACAAGCTATCGCCACACAAATTCAGTGGATTTTCCGAGAGTTCATTCTCATTTCCCGCTATTTCTAATGACATCATATCAAAAGGGACGTGTTCTTTCGATGATTCATCTTCAGTTGTTGACGCCTCAGATATGTCTGAATCAGCTAGTTCATCTAGTAATAAACACCATCTGTATAACACTCATGCATGGTTTCAAAATGGTAGTGCAGATTCTTCTCAGAATATGGTGGTAAACACAACTACTGAATGTGTTAGTAGAAGTAGTAAATCAGAAGTAACCAAATCCATATCTAAGCCTAAGATCCTTCTTGTGGAAGATAACAAGATCAACATCATGGTGACACAATCCATGATGAAGCAGTTGGGTCATAACATTGATGTTGTCACTAATGGAGCTGAAGCCGTGCGAGCAGTACAACGCTGTACTTATGACCTGGTTCTGATGGACGTGTGCATGCCGGTTATGGATGGACTTCAAGCAACAAAATTGATTCGGTCTTTTGAGGAAACAGGAAATTGGGATGCTGCTAAGAATGCTGGAATCGAGCAAAATCTACTAGATCGAGACTATGAAAGTTCTGTTCCATCGACAAAGCGAACTCCCATTGTTGCGATGACAGCAAATGCTTTGTCAGAGAGTGCAGAAGAGTGTTTTGCTAATGGTATGGACTCATTTGTATCAAAACCTGTGAGTTTACAAAAACTGAAAGAGTGTATTGAACAATATACTTAA 2793 0.3974 MEKECVDDVMEIEVLPSMWPEDIAMDVGKQFNIEKPGNDQGVLEEITIIEEPTIADFKRLMELTNFTEKGSSQLANLMKHWEYKQANVARLLREELDNLNKQRKDVELRKLEILEEHRFEEERYGGDKRPVSILDDVYDIWQQDQDIPCRKSDVVVQNKRIEIDAEYDTVVYWKQRAAHLEKLLEASMMREESLEQKLQESIKNFERQSSPVEELSQILKRADNFLHFILQNAPVVIGHQDKELRYRFIYNHFPSLQEEDIIGKTDVEIFTGSGVRESQDFKMEVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKTGETIGINYMGMDVTDQVRKRERMAKIREEIAVQKAKETELNKTIHITEETMRAKQVLATMSHEIRSPLSGVVSMAEILSTTKLDREQRQLLDVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLQKILTLEGHVADDVPIEVTGDVLRIRQILTNLISNAIKFTHEGKVGINLYVMQEPIFSKAESIQKITSCQSTISLNVMKEEKYLSTPQNECSMNGDKEDQHHSAETSVWIGCDVYDTGIGIPENAKHSLFKRYMQVSVDHARKYGGTGLGLAICKQLVELMGGNLTVSSKEQHGSTFTFILPYKVSIACDSSDYSDEFSDMEHNEAASDDTTTEGFFQFHTNRTHKLSPHKFSGFSESSFSFPAISNDIISKGTCSFDDSSSVVDASDMSESASSSSNKHHLYNTHAWFQNGSADSSQNMVVNTTTECVSRSSKSEVTKSISKPKILLVEDNKINIMVTQSMMKQLGHNIDVVTNGAEAVRAVQRCTYDLVLMDVCMPVMDGLQATKLIRSFEETGNWDAAKNAGIEQNLLDRDYESSVPSTKRTPIVAMTANALSESAEECFANGMDSFVSKPVSLQKLKECIEQYT 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03886 930 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 482 645 IPR003594 -
Vifa2g03886 930 PRINTS Bacterial sensor protein C-terminal signature 631 644 IPR004358 GO:0016310|GO:0016772
Vifa2g03886 930 PRINTS Bacterial sensor protein C-terminal signature 572 586 IPR004358 GO:0016310|GO:0016772
Vifa2g03886 930 PRINTS Bacterial sensor protein C-terminal signature 607 625 IPR004358 GO:0016310|GO:0016772
Vifa2g03886 930 CDD REC_hyHK_CKI1_RcsC-like 788 926 - -
Vifa2g03886 930 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 425 645 IPR036890 -
Vifa2g03886 930 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 369 436 IPR036097 GO:0000155|GO:0007165
Vifa2g03886 930 Gene3D - 358 436 - -
Vifa2g03886 930 Coils Coil 177 208 - -
Vifa2g03886 930 FunFam Histidine kinase 5 213 348 - -
Vifa2g03886 930 SMART HKATPase_4 482 647 IPR003594 -
Vifa2g03886 930 Pfam Response regulator receiver domain 788 855 IPR001789 GO:0000160
Vifa2g03886 930 ProSiteProfiles Histidine kinase domain profile. 378 647 IPR005467 -
Vifa2g03886 930 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 60 929 - -
Vifa2g03886 930 FunFam Histidine kinase 5 780 930 - -
Vifa2g03886 930 CDD HATPase_EvgS-ArcB-TorS-like 487 644 - -
Vifa2g03886 930 SMART REC_2 786 926 IPR001789 GO:0000160
Vifa2g03886 930 Coils Coil 89 116 - -
Vifa2g03886 930 CDD HisKA 370 432 IPR003661 GO:0000155|GO:0007165
Vifa2g03886 930 ProSiteProfiles Response regulatory domain profile. 787 930 IPR001789 GO:0000160
Vifa2g03886 930 Gene3D - 437 650 IPR036890 -
Vifa2g03886 930 Gene3D - 780 930 - -
Vifa2g03886 930 Gene3D PAS domain 212 348 - -
Vifa2g03886 930 SUPERFAMILY CheY-like 784 929 IPR011006 -
Vifa2g03886 930 Pfam His Kinase A (phospho-acceptor) domain 374 436 IPR003661 GO:0000155|GO:0007165
Vifa2g03886 930 SMART HisKA_10 371 436 IPR003661 GO:0000155|GO:0007165
Vifa2g03886 930 FunFam Putative histidine kinase 5 359 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03886 Vifa-Chr2 1136096779 1136100715 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03886 10 929 Histidine Kinase Gene Family AT5G10720 58.750 0.0 1071
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa2g03886 HATPase_c 2e-26 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03886 - - gmx:100811117 1399.03