LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa2g03885	ATGGAGAAAGAGTGTGTTGATGATGTTATGGAAATTGAAGTCCTTCCTTCAATGTGGCCAGAAGATATTGCAATGGATGTTGGAAAACAGTTCAATATCGAAAAACCCGGAAATGACCAAGGTGTGTTAGAAGAGATTACAATCATAGAAGAACCAACTATAGCCGATTTCAAGCGTCTCATGGAGCTAACAAATTTCACCGAAAAAGGTTCTTCTCAATTAGCCAACCTTATGAAACACTGGGAGTATAAACAAGCCAACGTCGCGCGTCTTCTAAGAGAAGAACTCGACAATCTAAACAAACAACGAAAGGATGTTGAGTTAAGGAAGTTGGAGATACTGGAAGAGCATAGGTTCGAGGAAGAAAGATATGGAGGCGATAAACGGCCGGTTTCTATATTGGATGATGTTTATGATATATGGCAACAAGATCAAGACATACCTTGTAGAAAAAGTGATGTTGTGGTTCAAAACAAGAGAATTGAAATTGATGCCGAGTATGATACGGTTGTGTACTGGAAACAGCGAGCCGCGCACTTGGAAAAGCTTCTGGAGGCAAGTATGATGAGAGAAGAGTCTCTTGAACAGAAGTTGCAAGAGAGTATTAAGAACTTTGAGAGACAATCATCACCTGTTGAAGAACTCTCTCAGATTTTGAAGAGAGCAGATAATTTCTTGCATTTTATACTCCAAAATGCTCCGGTTGTTATTGGCCATCAGGACAAAGAGTTGCGATATCGCTTTATCTATAATCACTTTCCTAGTTTGCAAGAGGAGGACATCATAGGAAAAACGGATGTTGAAATATTCACTGGATCTGGTGTTAGGGAGTCTCAAGATTTTAAGATGGAAGTTTTAGAAAAAGGATTGCCTGCCAAAAGGGAAATCACTTTCGAGACAGAACTTTTTGGCTCGAAGACATTCTTGATTTATGTAGAACCTGTCTTCAGCAAGACAGGAGAAACAATTGGAATCAATTACATGGGAATGGATGTAACAGATCAGGTGAGAAAAAGAGAAAGAATGGCGAAGATTCGCGAAGAGATAGCTGTTCAAAAAGCGAAGGAAACAGAACTGAATAAAACCATTCACATCACAGAGGAAACTATGAGAGCAAAACAAGTTCTGGCAACAATGTCACATGAGATAAGATCTCCACTGTCTGGTGTTGTTAGCATGGCTGAAATTCTTTCCACCACAAAGCTTGATAGGGAACAACGACAGCTCTTGGATGTCATGTTATCGTCCGGAGACTTGGTTCTTCAACTTATAAATGACATACTTGATCTTTCCAAGGTTGAGTCAGGAGTAATGAAGTTGGAGGCTACAAAATTTCGACCGCGAGAGGTAGTAAAGCACGTGCTTCAGACAGCTGCAGCATCATTGCAGAAAATATTAACCTTAGAAGGACATGTAGCAGATGATGTGCCTATCGAGGTTACTGGCGATGTATTAAGGATTAGACAAATCCTCACAAATTTAATCAGCAACGCCATCAAGTTTACACATGAAGGCAAAGTTGGGATAAACCTTTATGTTATGCAAGAGCCAATTTTTTCAAAAGCTGAAAGCATACAAAAGATTACATCATGCCAATCAACCATTTCTCTAAATGTAATGAAAGAAGAAAAATATCTCTCAACACCTCAAAACGAATGCTCGATGAATGGAGATAAGGAGGATCAACATCACTCAGCTGAAACAAGCGTGTGGATAGGTTGTGATGTATATGATACAGGCATTGGAATACCAGAAAATGCAAAACATAGTTTATTTAAAAGGTACATGCAAGTCAGTGTAGACCACGCACGAAAGTACGGTGGTACAGGGCTAGGACTAGCAATATGCAAACAATTGGTTGAGTTGATGGGGGGTAATCTAACAGTGTCTAGCAAAGAACAGCATGACATGGAGCATAACGAAGCCGCTTCTGATGATACAACAACAGAAGGTTTCTTCCAATTCCACACAAACCGAACTCACAAGCTATCGCCACACAAATTCAGTGGATTTTCCGAGAGTTCATTCTCATTTCCCGCTATTTCTAATGACATCATATCAAAAGGGACGTGTTCTTTCGATGATTCATCTTCAGTTGTTGACGCCTCAGATATGTCTGAATCAGCTAGTTCATCTAGTAATAAACACCATCTGTATAACACTCATGCATGGTTTCAAAATGGTAGTGCAGATTCTTCTCAGAATATGGTGGTAAACACAACTACTGAATGTGTTAGTAGAAGTAGTAAATCAGAAGTAACCAAATCCATATCTAAGCCTAAGATCCTTCTTGTGGAAGATAACAAGATCAACATCATGGTGACACAATCCATGATGAAGCAGTTGGGTCATAACATTGATGTTGTCACTAATGGAGCTGAAGCCGTGCGAGCAGTACAACGCTGTACTTATGACCTGGTTCTGATGGACGTGTGCATGCCGGTTATGGATGGACTTCAAGCAACAAAATTGATTCGGTCTTTTGAGGAAACAGGAAATTGGGATGCTGCTAAGAATGCTGGAATCGAGCAAAATCTACTAGATCGAGACTATGAAAGTTCTGTTCCATCGACAAAGCGAACTCCCATTGTTGCGATGACAGCAAATGCTTTGTCAGAGAGTGCAGAAGAGTGTTTTGCTAATGGTATGGACTCATTTGTATCAAAACCTGTGAGTTTACAAAAACTGAAAGAGTGTATTGAACAATATACTTAA	2715	0.3978	MEKECVDDVMEIEVLPSMWPEDIAMDVGKQFNIEKPGNDQGVLEEITIIEEPTIADFKRLMELTNFTEKGSSQLANLMKHWEYKQANVARLLREELDNLNKQRKDVELRKLEILEEHRFEEERYGGDKRPVSILDDVYDIWQQDQDIPCRKSDVVVQNKRIEIDAEYDTVVYWKQRAAHLEKLLEASMMREESLEQKLQESIKNFERQSSPVEELSQILKRADNFLHFILQNAPVVIGHQDKELRYRFIYNHFPSLQEEDIIGKTDVEIFTGSGVRESQDFKMEVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKTGETIGINYMGMDVTDQVRKRERMAKIREEIAVQKAKETELNKTIHITEETMRAKQVLATMSHEIRSPLSGVVSMAEILSTTKLDREQRQLLDVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLQKILTLEGHVADDVPIEVTGDVLRIRQILTNLISNAIKFTHEGKVGINLYVMQEPIFSKAESIQKITSCQSTISLNVMKEEKYLSTPQNECSMNGDKEDQHHSAETSVWIGCDVYDTGIGIPENAKHSLFKRYMQVSVDHARKYGGTGLGLAICKQLVELMGGNLTVSSKEQHDMEHNEAASDDTTTEGFFQFHTNRTHKLSPHKFSGFSESSFSFPAISNDIISKGTCSFDDSSSVVDASDMSESASSSSNKHHLYNTHAWFQNGSADSSQNMVVNTTTECVSRSSKSEVTKSISKPKILLVEDNKINIMVTQSMMKQLGHNIDVVTNGAEAVRAVQRCTYDLVLMDVCMPVMDGLQATKLIRSFEETGNWDAAKNAGIEQNLLDRDYESSVPSTKRTPIVAMTANALSESAEECFANGMDSFVSKPVSLQKLKECIEQYT	904

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa2g03885	904	CDD	HisKA	373	432	IPR003661	GO:0000155\|GO:0007165
	Vifa2g03885	904	Gene3D	-	437	638	IPR036890	-
	Vifa2g03885	904	ProSiteProfiles	Histidine kinase domain profile.	378	633	IPR005467	-
	Vifa2g03885	904	FunFam	Histidine kinase 5	754	904	-	-
	Vifa2g03885	904	PRINTS	Bacterial sensor protein C-terminal signature	572	586	IPR004358	GO:0016310\|GO:0016772
	Vifa2g03885	904	PRINTS	Bacterial sensor protein C-terminal signature	607	625	IPR004358	GO:0016310\|GO:0016772
	Vifa2g03885	904	Coils	Coil	177	208	-	-
	Vifa2g03885	904	SUPERFAMILY	Homodimeric domain of signal transducing histidine kinase	369	436	IPR036097	GO:0000155\|GO:0007165
	Vifa2g03885	904	FunFam	Putative histidine kinase 5	359	436	-	-
	Vifa2g03885	904	SUPERFAMILY	CheY-like	758	903	IPR011006	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa2g03885	Vifa-Chr2	1136096779	1136100715	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa2g03885	10	903	Histidine Kinase Gene Family	AT5G10720	56.875	0.0	1022

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	Others	Vifa2g03885		HATPase_c	3.6e-22	CL0025

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa2g03885	-		-	gmx:100811117	1342.79

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