Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03885 ATGGAGAAAGAGTGTGTTGATGATGTTATGGAAATTGAAGTCCTTCCTTCAATGTGGCCAGAAGATATTGCAATGGATGTTGGAAAACAGTTCAATATCGAAAAACCCGGAAATGACCAAGGTGTGTTAGAAGAGATTACAATCATAGAAGAACCAACTATAGCCGATTTCAAGCGTCTCATGGAGCTAACAAATTTCACCGAAAAAGGTTCTTCTCAATTAGCCAACCTTATGAAACACTGGGAGTATAAACAAGCCAACGTCGCGCGTCTTCTAAGAGAAGAACTCGACAATCTAAACAAACAACGAAAGGATGTTGAGTTAAGGAAGTTGGAGATACTGGAAGAGCATAGGTTCGAGGAAGAAAGATATGGAGGCGATAAACGGCCGGTTTCTATATTGGATGATGTTTATGATATATGGCAACAAGATCAAGACATACCTTGTAGAAAAAGTGATGTTGTGGTTCAAAACAAGAGAATTGAAATTGATGCCGAGTATGATACGGTTGTGTACTGGAAACAGCGAGCCGCGCACTTGGAAAAGCTTCTGGAGGCAAGTATGATGAGAGAAGAGTCTCTTGAACAGAAGTTGCAAGAGAGTATTAAGAACTTTGAGAGACAATCATCACCTGTTGAAGAACTCTCTCAGATTTTGAAGAGAGCAGATAATTTCTTGCATTTTATACTCCAAAATGCTCCGGTTGTTATTGGCCATCAGGACAAAGAGTTGCGATATCGCTTTATCTATAATCACTTTCCTAGTTTGCAAGAGGAGGACATCATAGGAAAAACGGATGTTGAAATATTCACTGGATCTGGTGTTAGGGAGTCTCAAGATTTTAAGATGGAAGTTTTAGAAAAAGGATTGCCTGCCAAAAGGGAAATCACTTTCGAGACAGAACTTTTTGGCTCGAAGACATTCTTGATTTATGTAGAACCTGTCTTCAGCAAGACAGGAGAAACAATTGGAATCAATTACATGGGAATGGATGTAACAGATCAGGTGAGAAAAAGAGAAAGAATGGCGAAGATTCGCGAAGAGATAGCTGTTCAAAAAGCGAAGGAAACAGAACTGAATAAAACCATTCACATCACAGAGGAAACTATGAGAGCAAAACAAGTTCTGGCAACAATGTCACATGAGATAAGATCTCCACTGTCTGGTGTTGTTAGCATGGCTGAAATTCTTTCCACCACAAAGCTTGATAGGGAACAACGACAGCTCTTGGATGTCATGTTATCGTCCGGAGACTTGGTTCTTCAACTTATAAATGACATACTTGATCTTTCCAAGGTTGAGTCAGGAGTAATGAAGTTGGAGGCTACAAAATTTCGACCGCGAGAGGTAGTAAAGCACGTGCTTCAGACAGCTGCAGCATCATTGCAGAAAATATTAACCTTAGAAGGACATGTAGCAGATGATGTGCCTATCGAGGTTACTGGCGATGTATTAAGGATTAGACAAATCCTCACAAATTTAATCAGCAACGCCATCAAGTTTACACATGAAGGCAAAGTTGGGATAAACCTTTATGTTATGCAAGAGCCAATTTTTTCAAAAGCTGAAAGCATACAAAAGATTACATCATGCCAATCAACCATTTCTCTAAATGTAATGAAAGAAGAAAAATATCTCTCAACACCTCAAAACGAATGCTCGATGAATGGAGATAAGGAGGATCAACATCACTCAGCTGAAACAAGCGTGTGGATAGGTTGTGATGTATATGATACAGGCATTGGAATACCAGAAAATGCAAAACATAGTTTATTTAAAAGGTACATGCAAGTCAGTGTAGACCACGCACGAAAGTACGGTGGTACAGGGCTAGGACTAGCAATATGCAAACAATTGGTTGAGTTGATGGGGGGTAATCTAACAGTGTCTAGCAAAGAACAGCATGACATGGAGCATAACGAAGCCGCTTCTGATGATACAACAACAGAAGGTTTCTTCCAATTCCACACAAACCGAACTCACAAGCTATCGCCACACAAATTCAGTGGATTTTCCGAGAGTTCATTCTCATTTCCCGCTATTTCTAATGACATCATATCAAAAGGGACGTGTTCTTTCGATGATTCATCTTCAGTTGTTGACGCCTCAGATATGTCTGAATCAGCTAGTTCATCTAGTAATAAACACCATCTGTATAACACTCATGCATGGTTTCAAAATGGTAGTGCAGATTCTTCTCAGAATATGGTGGTAAACACAACTACTGAATGTGTTAGTAGAAGTAGTAAATCAGAAGTAACCAAATCCATATCTAAGCCTAAGATCCTTCTTGTGGAAGATAACAAGATCAACATCATGGTGACACAATCCATGATGAAGCAGTTGGGTCATAACATTGATGTTGTCACTAATGGAGCTGAAGCCGTGCGAGCAGTACAACGCTGTACTTATGACCTGGTTCTGATGGACGTGTGCATGCCGGTTATGGATGGACTTCAAGCAACAAAATTGATTCGGTCTTTTGAGGAAACAGGAAATTGGGATGCTGCTAAGAATGCTGGAATCGAGCAAAATCTACTAGATCGAGACTATGAAAGTTCTGTTCCATCGACAAAGCGAACTCCCATTGTTGCGATGACAGCAAATGCTTTGTCAGAGAGTGCAGAAGAGTGTTTTGCTAATGGTATGGACTCATTTGTATCAAAACCTGTGAGTTTACAAAAACTGAAAGAGTGTATTGAACAATATACTTAA 2715 0.3978 MEKECVDDVMEIEVLPSMWPEDIAMDVGKQFNIEKPGNDQGVLEEITIIEEPTIADFKRLMELTNFTEKGSSQLANLMKHWEYKQANVARLLREELDNLNKQRKDVELRKLEILEEHRFEEERYGGDKRPVSILDDVYDIWQQDQDIPCRKSDVVVQNKRIEIDAEYDTVVYWKQRAAHLEKLLEASMMREESLEQKLQESIKNFERQSSPVEELSQILKRADNFLHFILQNAPVVIGHQDKELRYRFIYNHFPSLQEEDIIGKTDVEIFTGSGVRESQDFKMEVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKTGETIGINYMGMDVTDQVRKRERMAKIREEIAVQKAKETELNKTIHITEETMRAKQVLATMSHEIRSPLSGVVSMAEILSTTKLDREQRQLLDVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLQKILTLEGHVADDVPIEVTGDVLRIRQILTNLISNAIKFTHEGKVGINLYVMQEPIFSKAESIQKITSCQSTISLNVMKEEKYLSTPQNECSMNGDKEDQHHSAETSVWIGCDVYDTGIGIPENAKHSLFKRYMQVSVDHARKYGGTGLGLAICKQLVELMGGNLTVSSKEQHDMEHNEAASDDTTTEGFFQFHTNRTHKLSPHKFSGFSESSFSFPAISNDIISKGTCSFDDSSSVVDASDMSESASSSSNKHHLYNTHAWFQNGSADSSQNMVVNTTTECVSRSSKSEVTKSISKPKILLVEDNKINIMVTQSMMKQLGHNIDVVTNGAEAVRAVQRCTYDLVLMDVCMPVMDGLQATKLIRSFEETGNWDAAKNAGIEQNLLDRDYESSVPSTKRTPIVAMTANALSESAEECFANGMDSFVSKPVSLQKLKECIEQYT 904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03885 904 CDD HisKA 373 432 IPR003661 GO:0000155|GO:0007165
Vifa2g03885 904 Gene3D - 437 638 IPR036890 -
Vifa2g03885 904 ProSiteProfiles Histidine kinase domain profile. 378 633 IPR005467 -
Vifa2g03885 904 FunFam Histidine kinase 5 754 904 - -
Vifa2g03885 904 PRINTS Bacterial sensor protein C-terminal signature 572 586 IPR004358 GO:0016310|GO:0016772
Vifa2g03885 904 PRINTS Bacterial sensor protein C-terminal signature 607 625 IPR004358 GO:0016310|GO:0016772
Vifa2g03885 904 Coils Coil 177 208 - -
Vifa2g03885 904 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 369 436 IPR036097 GO:0000155|GO:0007165
Vifa2g03885 904 FunFam Putative histidine kinase 5 359 436 - -
Vifa2g03885 904 SUPERFAMILY CheY-like 758 903 IPR011006 -
Vifa2g03885 904 Pfam Response regulator receiver domain 762 829 IPR001789 GO:0000160
Vifa2g03885 904 FunFam Histidine kinase 5 213 348 - -
Vifa2g03885 904 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 482 634 IPR003594 -
Vifa2g03885 904 ProSiteProfiles Response regulatory domain profile. 761 904 IPR001789 GO:0000160
Vifa2g03885 904 Coils Coil 89 116 - -
Vifa2g03885 904 Pfam His Kinase A (phospho-acceptor) domain 374 436 IPR003661 GO:0000155|GO:0007165
Vifa2g03885 904 Gene3D PAS domain 212 348 - -
Vifa2g03885 904 Gene3D - 358 436 - -
Vifa2g03885 904 SMART REC_2 760 900 IPR001789 GO:0000160
Vifa2g03885 904 CDD REC_hyHK_CKI1_RcsC-like 762 900 - -
Vifa2g03885 904 SMART HKATPase_4 482 682 IPR003594 -
Vifa2g03885 904 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 425 634 IPR036890 -
Vifa2g03885 904 Gene3D - 754 904 - -
Vifa2g03885 904 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 59 903 - -
Vifa2g03885 904 SMART HisKA_10 371 436 IPR003661 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03885 Vifa-Chr2 1136096779 1136100715 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03885 10 903 Histidine Kinase Gene Family AT5G10720 56.875 0.0 1022
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa2g03885 HATPase_c 3.6e-22 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03885 - - gmx:100811117 1342.79