Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03875 ATGGATCATCATGAAATCACCACTGATCAAGTTCAAGGTAAGACACCATCATCTTCCACCACTTCAAGTGGAAATAATGATGATAACAAGAAGAAGATGTATAGAGGTGTGAGAAAGAGGAAGTGGGGAAAATGGGTGTCTGAAATAAGGCTACCAAATAGCCGTGAAAGAATATGGTTAGGATCATATGATTCGCCTCAGAAAGCAGCAAGAGCGTTCGACGCTGCACTTTACTGTCTTCGTGGTCCCCATGCAACTTTCAATTTCTCTGATTCACCTTTTCATTTGGAAAACACTCCAGTTTCTAACCATCCACAACAGATTCGAGAGATTGCTTCTAATTACGCCAACAAAACTCCACAAATTGATACAGATAATAATAATAATAATAATGAAAATATTAATACAAATGAATCCAAAACTGTGGCTGAAGTTATTGGCTCGTCGTCTTCTACTACTACTATGAATGATAATGTTGGGAACAACATTGATTGGACATTTTTGGATGTGTTGGATGGTTCGAGTAATGATGCAAATTTTTTTGAATCTGAAAATTATGGTGGCTTCTATTCTGATTTAGAAAAGATGAATTCGGGTGAGTTATTCAGTTTACCAGCACAACTACAACTATTTGAGGACAATATTCAGAAGGAACTAGTTAAAGTTGAAGGTGATGATGATGTTTATGTTGACCCTTTTTCTCATCAATCATTCCTTTGGAACTGGGACTTTTGA 735 0.366 MDHHEITTDQVQGKTPSSSTTSSGNNDDNKKKMYRGVRKRKWGKWVSEIRLPNSRERIWLGSYDSPQKAARAFDAALYCLRGPHATFNFSDSPFHLENTPVSNHPQQIREIASNYANKTPQIDTDNNNNNNENINTNESKTVAEVIGSSSSTTTMNDNVGNNIDWTFLDVLDGSSNDANFFESENYGGFYSDLEKMNSGELFSLPAQLQLFEDNIQKELVKVEGDDDVYVDPFSHQSFLWNWDF 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03875 244 CDD AP2 34 92 IPR001471 GO:0003700|GO:0006355
Vifa2g03875 244 SMART rav1_2 33 96 IPR001471 GO:0003700|GO:0006355
Vifa2g03875 244 MobiDBLite consensus disorder prediction 118 137 - -
Vifa2g03875 244 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700|GO:0006355
Vifa2g03875 244 PRINTS Ethylene responsive element binding protein signature 56 72 IPR001471 GO:0003700|GO:0006355
Vifa2g03875 244 MobiDBLite consensus disorder prediction 10 27 - -
Vifa2g03875 244 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 16 205 - -
Vifa2g03875 244 FunFam Ethylene-responsive transcription factor 2 32 91 - -
Vifa2g03875 244 Pfam AP2 domain 34 82 IPR001471 GO:0003700|GO:0006355
Vifa2g03875 244 Gene3D AP2/ERF domain 32 91 IPR036955 GO:0003700|GO:0006355
Vifa2g03875 244 SUPERFAMILY DNA-binding domain 33 92 IPR016177 GO:0003677
Vifa2g03875 244 ProSiteProfiles AP2/ERF domain profile. 33 90 IPR001471 GO:0003700|GO:0006355
Vifa2g03875 244 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03875 Vifa-Chr2 1132769014 1132769748 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03875 34 145 AP2-EREBP Transcription Factor Family AT1G19210 54.701 6.67e-36 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vifa2g03875 AP2 9.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03875 - - psat:127084170 306.99