Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03874 ATGGATCATCAACATCATGGAATAACCACTGGTCAAACTAAAACCCTAGCATCAGCATCATCATCAATATCATCTTCAACTTCAAGTGGTAATAATGATGATAACAAGAAGAAGATGTATAGAGGTGTGAGAAAAAGGAAGTGGGGAAAATGGGTGTCTGAAATAAGACTACCAAATAGCCGAGAAAGAATATGGTTAGGATCATATGATTCACCTCAGAAAGCAGCAAGAGCGTTCGACGCTGCACTTTACTGTCTTCGTGGTCGCCATGCAACTTTCAATTTCTCTGATTCACCTTTTCATTTGGAAAACACTGCAGTTTCTAACGATCCACAACAGATTCGAGAGATTGCTGCTAACTTTGGCAACAAAAATCCACCAATTGTTATCGATAGTAATAGTAATAGTAATAATAATAATGGAAATAATACCACAGATCAATCCAAAACTGTGACTGAAATTATTGGCTCTTCAACTTCTACTACTAGTACTACTGCTGTGTATGATAGTGGGAACACTATTGATTGGACATTTTTGAACGTGTTAGAAGATGGTTCAAGTAATGATGCTACTTTAGTTGGGTCTGAAAATTATGGTGATTTCTATTTTGACTTAGAAAAGATGCATTCGGATGAGTTATTATCGTATTACACTTCACCAGTTTTTGAGGATAATACTAATCAGAATGAATTAGTAGAAGATGATGGTAAGCACCATTCATTCCTTTGGAGCTGGAACTTCTGA 744 0.3629 MDHQHHGITTGQTKTLASASSSISSSTSSGNNDDNKKKMYRGVRKRKWGKWVSEIRLPNSRERIWLGSYDSPQKAARAFDAALYCLRGRHATFNFSDSPFHLENTAVSNDPQQIREIAANFGNKNPPIVIDSNSNSNNNNGNNTTDQSKTVTEIIGSSTSTTSTTAVYDSGNTIDWTFLNVLEDGSSNDATLVGSENYGDFYFDLEKMHSDELLSYYTSPVFEDNTNQNELVEDDGKHHSFLWSWNF 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03874 247 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
Vifa2g03874 247 Pfam AP2 domain 40 88 IPR001471 GO:0003700|GO:0006355
Vifa2g03874 247 CDD AP2 40 98 IPR001471 GO:0003700|GO:0006355
Vifa2g03874 247 FunFam Ethylene-responsive transcription factor 2 38 97 - -
Vifa2g03874 247 SUPERFAMILY DNA-binding domain 39 98 IPR016177 GO:0003677
Vifa2g03874 247 Gene3D AP2/ERF domain 38 97 IPR036955 GO:0003700|GO:0006355
Vifa2g03874 247 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Vifa2g03874 247 MobiDBLite consensus disorder prediction 8 33 - -
Vifa2g03874 247 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 20 173 - -
Vifa2g03874 247 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Vifa2g03874 247 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Vifa2g03874 247 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03874 Vifa-Chr2 1131808992 1131809735 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03874 40 123 AP2-EREBP Transcription Factor Family AT1G19210 70.238 1.18e-36 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vifa2g03874 AP2 1.9e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03874 - - psat:127084170 335.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03874 2 1131808992 1131809735 Vifa2g03874 2 1131808992 1131809735 ECH