Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03873 ATGGATCATCAACATCATGGAATAACCACTGGTCAAACTAAAACCCTAGCATCATCATCATCATCAATATCATCTTCAACTTCAAGTGGTAATAATGATGATAACAACAAGAAGATGTATAGAGGTGTGAGAAAGAGGAAGTGGGGAAAATGGGTGTCTGAAATAAGACTACCAAATAGCCGAGAAAGAATATGGTTAGGATCATATGATTCACCTCAGAAAGCAGCAAGAGCGTTCGACGCTGCACTTTACTGTCTTCGTGGTCGCCATGCAACTTTCAATTTCTCTGATTCACCTTTTCATTTGGAAAACACTGCAGTCTCTAACGATCCACAACAGATTCGAGAGATTGCTGCTAACTTTGGCAACAACAATCCACCAATTGTTATTGATAATAATAATCACAATAATGGAAATAATAACACAGATCAATCCAAAACTGTGACTGAAATTATTGGCTCTTCTTCTACTTCTACTAGTACTACTACTACTATGCATGATAGTGGGAACACGATTGATTGGACATTTTTGAATGGTTCAAGTAACGACGCTAATGTTGTTGGTTTTGAAAATTACGGTGATTTCTATTGTGACATAGAAATGATGCATTCGGATGAGTTATTATTGTATTACACTTCACCACCACTTTTTGAGGATAATAATAATCAGAACGAATTAGCAGAAGTCGAAGGTGATAATGATGTTTATGATGATGACCCTTTTTGTCATCAATCATTCCTTTGGAGCTGGAACTTCTGA 759 0.3663 MDHQHHGITTGQTKTLASSSSSISSSTSSGNNDDNNKKMYRGVRKRKWGKWVSEIRLPNSRERIWLGSYDSPQKAARAFDAALYCLRGRHATFNFSDSPFHLENTAVSNDPQQIREIAANFGNNNPPIVIDNNNHNNGNNNTDQSKTVTEIIGSSSTSTSTTTTMHDSGNTIDWTFLNGSSNDANVVGFENYGDFYCDIEMMHSDELLLYYTSPPLFEDNNNQNELAEVEGDNDVYDDDPFCHQSFLWSWNF 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03873 252 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
Vifa2g03873 252 MobiDBLite consensus disorder prediction 8 36 - -
Vifa2g03873 252 CDD AP2 40 98 IPR001471 GO:0003700|GO:0006355
Vifa2g03873 252 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 18 170 - -
Vifa2g03873 252 SUPERFAMILY DNA-binding domain 39 98 IPR016177 GO:0003677
Vifa2g03873 252 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Vifa2g03873 252 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Vifa2g03873 252 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Vifa2g03873 252 Pfam AP2 domain 40 88 IPR001471 GO:0003700|GO:0006355
Vifa2g03873 252 MobiDBLite consensus disorder prediction 1 41 - -
Vifa2g03873 252 Gene3D AP2/ERF domain 38 97 IPR036955 GO:0003700|GO:0006355
Vifa2g03873 252 FunFam Ethylene-responsive transcription factor 2 38 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03873 Vifa-Chr2 1131426907 1131427665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03873 40 124 AP2-EREBP Transcription Factor Family AT1G19210 69.412 2.24e-36 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa2g03873 AP2 2e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03873 - - psat:127084170 319.701