Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa2g03873 | ATGGATCATCAACATCATGGAATAACCACTGGTCAAACTAAAACCCTAGCATCATCATCATCATCAATATCATCTTCAACTTCAAGTGGTAATAATGATGATAACAACAAGAAGATGTATAGAGGTGTGAGAAAGAGGAAGTGGGGAAAATGGGTGTCTGAAATAAGACTACCAAATAGCCGAGAAAGAATATGGTTAGGATCATATGATTCACCTCAGAAAGCAGCAAGAGCGTTCGACGCTGCACTTTACTGTCTTCGTGGTCGCCATGCAACTTTCAATTTCTCTGATTCACCTTTTCATTTGGAAAACACTGCAGTCTCTAACGATCCACAACAGATTCGAGAGATTGCTGCTAACTTTGGCAACAACAATCCACCAATTGTTATTGATAATAATAATCACAATAATGGAAATAATAACACAGATCAATCCAAAACTGTGACTGAAATTATTGGCTCTTCTTCTACTTCTACTAGTACTACTACTACTATGCATGATAGTGGGAACACGATTGATTGGACATTTTTGAATGGTTCAAGTAACGACGCTAATGTTGTTGGTTTTGAAAATTACGGTGATTTCTATTGTGACATAGAAATGATGCATTCGGATGAGTTATTATTGTATTACACTTCACCACCACTTTTTGAGGATAATAATAATCAGAACGAATTAGCAGAAGTCGAAGGTGATAATGATGTTTATGATGATGACCCTTTTTGTCATCAATCATTCCTTTGGAGCTGGAACTTCTGA | 759 | 0.3663 | MDHQHHGITTGQTKTLASSSSSISSSTSSGNNDDNNKKMYRGVRKRKWGKWVSEIRLPNSRERIWLGSYDSPQKAARAFDAALYCLRGRHATFNFSDSPFHLENTAVSNDPQQIREIAANFGNNNPPIVIDNNNHNNGNNNTDQSKTVTEIIGSSSTSTSTTTTMHDSGNTIDWTFLNGSSNDANVVGFENYGDFYCDIEMMHSDELLLYYTSPPLFEDNNNQNELAEVEGDNDVYDDDPFCHQSFLWSWNF | 252 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa2g03873 | 252 | SMART | rav1_2 | 39 | 102 | IPR001471 | GO:0003700|GO:0006355 | |
Vifa2g03873 | 252 | MobiDBLite | consensus disorder prediction | 8 | 36 | - | - | |
Vifa2g03873 | 252 | CDD | AP2 | 40 | 98 | IPR001471 | GO:0003700|GO:0006355 | |
Vifa2g03873 | 252 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 18 | 170 | - | - | |
Vifa2g03873 | 252 | SUPERFAMILY | DNA-binding domain | 39 | 98 | IPR016177 | GO:0003677 | |
Vifa2g03873 | 252 | PRINTS | Ethylene responsive element binding protein signature | 62 | 78 | IPR001471 | GO:0003700|GO:0006355 | |
Vifa2g03873 | 252 | PRINTS | Ethylene responsive element binding protein signature | 40 | 51 | IPR001471 | GO:0003700|GO:0006355 | |
Vifa2g03873 | 252 | ProSiteProfiles | AP2/ERF domain profile. | 39 | 96 | IPR001471 | GO:0003700|GO:0006355 | |
Vifa2g03873 | 252 | Pfam | AP2 domain | 40 | 88 | IPR001471 | GO:0003700|GO:0006355 | |
Vifa2g03873 | 252 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
Vifa2g03873 | 252 | Gene3D | AP2/ERF domain | 38 | 97 | IPR036955 | GO:0003700|GO:0006355 | |
Vifa2g03873 | 252 | FunFam | Ethylene-responsive transcription factor 2 | 38 | 97 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa2g03873 | Vifa-Chr2 | 1131426907 | 1131427665 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa2g03873 | 40 | 124 | AP2-EREBP Transcription Factor Family | AT1G19210 | 69.412 | 2.24e-36 | 125 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2 or ERF-ERF | Vifa2g03873 | AP2 | 2e-11 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa2g03873 | - | - | psat:127084170 | 319.701 |