Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03870 ATGGCGGATGTTTTAGTAATGAAAGAGATTGAAGACAAAGCCGCGTCTCTCGGAATTGATTTATCTACTGTTGATCTCGATTCCATTCACCTCCCACATGGTGAAGACTGTGGCATTTTGAGTGATGATGAAGAAGTTTTTCAAGAGGAGAATCTTGAGTTTGATACTGGTTTTGGCAACATTATAGTAGTTGATAATACCCCTGTTGTTACCAAAGAGAAATTTGCGAAGCTTGAAGGTGTTATTAGGAAGATTTTTAATCAAATGGGTGTTATTAAGGACGATGGCTTCTGGATGCCTGTTGATCCTGTCACTGAAAAGACAGTTGGTTACTGCTTCATTGAGTACAATACTCCTCAGGAAGCTGAGCTTGCAAAAGAGAAGGCTCAGGGATACAAATTGGATCGTTCTCACATATTTACTGTTAGTATGTTTGATGATTTTGACCGGTTTATGAAAGTGCCAGATGAATGGGCTCCTCCTCCCAAAAAGGATTATGCTCCAGGGGAGAATCTTCAAGAATGGCTCACTGATGCTAAGGCCCGAGACCAGTTTGTTATCCGTGCTAGTTCAGATACAGAGGTTTTGTGGAATGACGCTAGGCATTTAAAGCCTGATCCTGTTTATAAACGTGCATTTTGGACCGAGAGTTTTGTACAATGGTCTCCTCTGGGCACATACTTGGCAACTGTTCACCGTCAGGGGGCAGCAGTCTGGGGAGGTGCTACAACCTTCAATCGTCTCATGCGTTACGCTCATCCCCAGGTGAAGCTAATTGACTTTTCACCCGGTGAGAAGTATTTGGTAACTTATAGCAGCCATGAACCAAGCAATCCCCGGGATGCTAATAGGGTTATAATAAATATATTTGATGTGAGAACTGGTAAAGTGATGAGAGATTTTAAGGGAAGTGCTGATGATTTTGCTATCGGAGGTACCGGGGGTGTCACTGGAGTGTCTTGGCCTGTTTTCAAATGGAGTGGTGGAAGAGAAGATAAGTACTTTGCAAGGATGGGGAAGAATGTACTTTCTGTATACGAGGCAGAAACATTTTCTCTTGTTGACAAAAAATCCTTAAAGGTTGAAAATATAATGGATTTCAGCTGGTCACCAACTGATCCAATCATTTCACTTTTTGTTCCCGAGACGGGAGGTGGGAACCAGCCTGCTAGGGTAAGTCTTGTTTCAATCCCCAGCAAGGAAGAACTCAGACAAAAAAACCTTTTTAGTGTCAGTGACTGCAAGATGTACTGGCAGAGCAATGGGGATTACCTTGCTGTTAATGTGGACCGATATACCAAGACAAAGAAAAGTACTTACACTGGCTTTGAGCTTTTCCGTATTAAGGAACGTGACATACCCATTGAAGTTCTAGAGCTTGAGAATAAGAATGATAAGATCATTGCATTTGCATGGGAGCCAAAGGGACATAGATTTGCTGTTATTCATGGCGACAACCCTAAGCCTGATATTAGTATCTATTCTATGCGGACTGCTCAGAACACTGGCCGTGTTTCAAAGCTCACTACTCTGAAAGGAAAGCAGGCAAATGCTTTATTTTGGTCTCCTGCAGGCCGCTTCATTGTATTAGCAGGGTTGAAAGGCTTCAATGGACTGTTGGAATTTTACAATGTTGATGAGCTTGAAACCATGGCTACTACTGATCATTTTATGGCAACCGACGTTGAATGGGATCCAACTGGAAGGTATGTTGCAACTGCTGTCACCTCCGTTCATGAAATGGAAAATGGATTCAATATATGGTCTTTCAATGGCAAACATCTTTATCGGATATTGAAGGATCACTTCTTTCAGTTCTTATGGAGACCAAGGCCACCATCCTTCTTGACTCCTGAGAAAGAGGAAGAGATTGCAAAGAACTTGAAGAAGTATAGTAAGAAATATGAAGCAGAAGATCAAGATGTTTCATTGTTGCTGAGTGAGCAGGAGCGTGAGAAGCGTAGGGTCCTGAAAGAAGATTGGGACAAGTGGGTCAATGAGTGGAAGCTGATGCATGAAGAAGAGAGGTTAGAGAGGATAAATCTGAGGGACGGAGAAGCTAGTGACGAGGAAGAGGAGTATGAGGCAAAGGACATTGAAGTTGAGGAGGTAGTTGATGTAACCAAAGAGATCCTTCAGTTTGAGTATGGTCAGGAGTGA 2160 0.4255 MADVLVMKEIEDKAASLGIDLSTVDLDSIHLPHGEDCGILSDDEEVFQEENLEFDTGFGNIIVVDNTPVVTKEKFAKLEGVIRKIFNQMGVIKDDGFWMPVDPVTEKTVGYCFIEYNTPQEAELAKEKAQGYKLDRSHIFTVSMFDDFDRFMKVPDEWAPPPKKDYAPGENLQEWLTDAKARDQFVIRASSDTEVLWNDARHLKPDPVYKRAFWTESFVQWSPLGTYLATVHRQGAAVWGGATTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVIINIFDVRTGKVMRDFKGSADDFAIGGTGGVTGVSWPVFKWSGGREDKYFARMGKNVLSVYEAETFSLVDKKSLKVENIMDFSWSPTDPIISLFVPETGGGNQPARVSLVSIPSKEELRQKNLFSVSDCKMYWQSNGDYLAVNVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPKPDISIYSMRTAQNTGRVSKLTTLKGKQANALFWSPAGRFIVLAGLKGFNGLLEFYNVDELETMATTDHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKHLYRILKDHFFQFLWRPRPPSFLTPEKEEEIAKNLKKYSKKYEAEDQDVSLLLSEQEREKRRVLKEDWDKWVNEWKLMHEEERLERINLRDGEASDEEEEYEAKDIEVEEVVDVTKEILQFEYGQE 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03870 719 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 48 713 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vifa2g03870 719 Gene3D - 55 154 IPR012677 -
Vifa2g03870 719 CDD RRM_eIF3B 59 143 IPR034363 -
Vifa2g03870 719 PIRSF Transl_init_eIF3b 7 714 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vifa2g03870 719 SUPERFAMILY DPP6 N-terminal domain-like 218 600 - -
Vifa2g03870 719 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 32 711 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vifa2g03870 719 SUPERFAMILY RNA-binding domain, RBD 80 145 IPR035979 GO:0003676
Vifa2g03870 719 Gene3D - 181 383 IPR015943 GO:0005515
Vifa2g03870 719 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 137 IPR000504 GO:0003723
Vifa2g03870 719 Gene3D - 414 619 IPR015943 GO:0005515
Vifa2g03870 719 Pfam Eukaryotic translation initiation factor eIF2A 406 606 IPR013979 -
Vifa2g03870 719 FunFam Eukaryotic translation initiation factor 3 subunit B 181 382 - -
Vifa2g03870 719 FunFam Eukaryotic translation initiation factor 3 subunit B 55 154 - -
Vifa2g03870 719 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 147 IPR000504 GO:0003723
Vifa2g03870 719 FunFam Eukaryotic translation initiation factor 3 subunit B 411 626 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03870 9 713 Eukaryotic Initiation Factors Gene Family AT5G27640 76.487 0.0 1159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03870 K03253 - gmx:100817394 1343.56