Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03869 ATGGGTGGTGAGGGTAGAGTTGAGATTGTGAGTGGTAAAGGGTGCTCGAGGTTGTTTTCGTCTTCGTTTACTTCAATCAGAGGTCTTCAGCCATTGGATCAAATGTCTCCTGTTTCGTCGTCTCCGCAAGTGTCATCAACTGCTCCTTTTGCTGGTCTTGTTATATGTGTTACTGGTTTATCTAAAGAAGCAAGGAATCAGGTTATGGAGGCTACAGAGAGATTAGGTGGCCAGTATAGCCCCAATCTGCATCCTCAATGTACTCATTTGGTGCACAACTTCAGTGGATGCAAATTTGAGCATGCGCGGAAGCATGGAGGAAAAAATGGTCTCTTTGTTGTCACACTGGGTTGGTTTGTGGATAGTGTCAGGAAAAATGTAAGGTTGACCGAATCACTTTATAGTCTGAAGAGCTATGGAGATAACAATATGCACTTGGATGATTTTAGACAGCTTAAAGGGTATACAAATACTGGAAATTGTCTTCCTGCTAGAATCCATGAAACAAAGCATTCTCATCGTGCTGAAGAATTTCTAAGATTCTCCGATAAAGAAGAGTCTAACAGAAATTTGGACTCAACTTTGTCTGGTTGCTCCATCTATGTTGATCCACACATTTCAACCGAATTGCAGAAAAAGGTTGTCGAGTCTGCCTCAAGAGAAGGTGCTAGTTTGGTGGAACAATGGTTTGTTGGTTGCAATGTTAGTCATGTAGTGACTGAAGGGACATCCATCCAAAGATATCTCGGATACTCTAGTAACCTCATTACTCCACTATGGATTCTCAAAACAGCTAAGGAGAAACAAGTGCAAAGGCTTGTTAACATGTCTGTTGATTTGGCAAGACAAGTTGGCTTGATGCTCGAAGACGTTCATAATGGCCTTTCAGGAAAGGAAGCAGTAAAGCAAAAAGTCCACGATGAACTTCAAGCCGGTAAAAGTGATATTGGTTACGAAGATAGACAACAAATTGTAAATTTGGCAAAAAATGGTGTCAGAAGTCGCCGTGGTCGTCGTATGCAGACATGTCAGACACCGATACGGCCGATAACACCTAACAACCTTCTAGACTCTATCTGCTGGTCAATATCAGAGGCAACTTCAACTGCTTCCATTTACACAGACTCTTTCAGCGCTGAAGATCCTAATGATAATCATACTTCAATATTTTTTGATGCAAAAGGGGATGCAAAGGATTCAGACACATCATTTTCAAACTCCACGCGTCCTCTAACAGAAAGTGAGAAATCTGAGTTGGTATTTAAAAATCATTTTCTCACCATACTCTTCCCAGTCGACCGGTTTTCCGAGATCGGCCCTTCCTCAAGGACATTTTTCAACATTAACGGTTTCACATGTCTTCAGGTGTTGGATCATATACATGCATTTTATCAGGAGAACATGTCAAGCCATGAAATAGAAGTGGCGATTCATACAGATTCAAGACACGCAGATAAGCTTCGATCAGTGTACTCGAGTAAGGAAACAGCGGAGCGTGGATATGCGGTGTTCAAACGAACTGAATTTTTGGGGAGTCGTACAAGTTTTGAAATGTTGAAGCGCGTGAGTGGAGATAACAACTCCAATGTGTATGAGTTATTACTTAGGGCGTAA 1614 0.417 MGGEGRVEIVSGKGCSRLFSSSFTSIRGLQPLDQMSPVSSSPQVSSTAPFAGLVICVTGLSKEARNQVMEATERLGGQYSPNLHPQCTHLVHNFSGCKFEHARKHGGKNGLFVVTLGWFVDSVRKNVRLTESLYSLKSYGDNNMHLDDFRQLKGYTNTGNCLPARIHETKHSHRAEEFLRFSDKEESNRNLDSTLSGCSIYVDPHISTELQKKVVESASREGASLVEQWFVGCNVSHVVTEGTSIQRYLGYSSNLITPLWILKTAKEKQVQRLVNMSVDLARQVGLMLEDVHNGLSGKEAVKQKVHDELQAGKSDIGYEDRQQIVNLAKNGVRSRRGRRMQTCQTPIRPITPNNLLDSICWSISEATSTASIYTDSFSAEDPNDNHTSIFFDAKGDAKDSDTSFSNSTRPLTESEKSELVFKNHFLTILFPVDRFSEIGPSSRTFFNINGFTCLQVLDHIHAFYQENMSSHEIEVAIHTDSRHADKLRSVYSSKETAERGYAVFKRTEFLGSRTSFEMLKRVSGDNNSNVYELLLRA 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03869 537 SUPERFAMILY BRCT domain 47 137 IPR036420 -
Vifa2g03869 537 SMART BRCT_7 192 268 IPR001357 -
Vifa2g03869 537 SMART BRCT_7 47 126 IPR001357 -
Vifa2g03869 537 Gene3D BRCT domain 48 138 IPR036420 -
Vifa2g03869 537 ProSiteProfiles BRCT domain profile. 190 278 IPR001357 -
Vifa2g03869 537 PANTHER BRCT DOMAIN DNA REPAIR PROTEIN-RELATED 3 537 - -
Vifa2g03869 537 Pfam Family of unknown function (DUF6699) 361 521 IPR046522 -
Vifa2g03869 537 Pfam twin BRCT domain 53 118 IPR001357 -
Vifa2g03869 537 CDD BRCT_TopBP1_rpt2_like 49 126 - -
Vifa2g03869 537 ProSiteProfiles BRCT domain profile. 45 136 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03869 Vifa-Chr2 1128958029 1128961596 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03869 49 136 Core DNA Replication Machinery Family AT1G77320 38.202 7.15e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03869 - - gmx:100815253 860.522