Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03868 ATGGGTGGTGAGGGTAGAGTTGAGATTGTGAGTGGTAAAGGGTGCTCGAGGTTGTTTTCGTCTTCGTTTACTTCAATCAGAGGTCTTCAGCCATTGGATCAAATGTCTCCTGTTTCGTCGTCTCCGCAAGTGTCATCAACTGCTCCTTTTGCTGGTCTTGTTATATGTGTTACTGGTTTATCTAAAGAAGCAAGGAATCAGGTTATGGAGGCTACAGAGAGATTAGGTGGCCAGTATAGCCCCAATCTGCATCCTCAATGTACTCATTTGGTGGTTCAGAACTTCAGTGGATGCAAATTTGAGCATGCGCGGAAGCATGGAGGAAAAAATGGTCTCTTTGTTGTCACACTGGGTTGGTTTGTGGATAGTGTCAGGAAAAATGTAAGGTTGACCGAATCACTTTATAGTCTGAAGAGCTATGGAGATAACAATATGCACTTGGATGATTTTAGACAGCTTAAAGGGTATACAAATACTGGAAATTGTCTTCCTGCTAGAATCCATGAAACAAAGCATTCTCATCGTGCTGAAGAATTTCTAAGATTCTCCGATAAAGAAGAGTCTAACAGAAATTTGGACTCAACTTTGTCTGGTTGCTCCATCTATGTTGATCCACACATTTCAACCGAATTGCAGAAAAAGGTTGTCGAGTCTGCCTCAAGAGAAGGTGCTAGTTTGGTGGAACAATGGTTTGTTGGTTGCAATGTTAGTCATGTAGTGACTGAAGGGACATCCATCCAAAGATATCTCGGATACTCTAGTAACCTCATTACTCCACTATGGATTCTCAAAACAGCTAAGGAGAAACAAGTGCAAAGGCTTGTTAACATGTCTGTTGATTTGGCAAGACAAGTTGGCTTGATGCTCGAAGACGTTCATAATGGCCTTTCAGGAAAGGAAGCAGTAAAGCAAAAAGTCCACGATGAACTTCAAGCCGGTAAAAGTGATATTGGTTACGAAGATAGACAACAAATTGTAAATTTGGCAAAAAATGGTGTCAGAAGTCGCCGTGGTCGTCGTATGCAGACATGTCAGACACCGATACGGCCGATAACACCTAACAACCTTCTAGACTCTATCTGCTGGTCAATATCAGAGGCAACTTCAACTGCTTCCATTTACACAGACTCTTTCAGCGCTGAAGATCCTAATGATAATCATACTTCAATATTTTTTGATGCAAAAGGGGATGCAAAGGATTCAGACACATCATTTTCAAACTCCACGCGTCCTCTAACAGAAAGTGAGAAATCTGAGTTGGTATTTAAAAATCATTTTCTCACCATACTCTTCCCAGTCGACCGGTTTTCCGAGATCGGCCCTTCCTCAAGGACATTTTTCAACATTAACGGTTTCACATGTCTTCAGGTGTTGGATCATATACATGCATTTTATCAGGAGAACATGTCAAGCCATGAAATAGAAGTGGCGATTCATACAGATTCAAGACACGCAGATAAGCTTCGATCAGTGTACTCGAGTAAGGAAACAGCGGAGCGTGGATATGCGGTGTTCAAACGAACTGAATTTTTGGGGAGTCGTACAAGTTTTGAAATGTTGAAGCGCGTGAGTGGAGATAACAACTCCAATGTGTATGAGTTATTACTTAGGGCGTAA 1617 0.4168 MGGEGRVEIVSGKGCSRLFSSSFTSIRGLQPLDQMSPVSSSPQVSSTAPFAGLVICVTGLSKEARNQVMEATERLGGQYSPNLHPQCTHLVVQNFSGCKFEHARKHGGKNGLFVVTLGWFVDSVRKNVRLTESLYSLKSYGDNNMHLDDFRQLKGYTNTGNCLPARIHETKHSHRAEEFLRFSDKEESNRNLDSTLSGCSIYVDPHISTELQKKVVESASREGASLVEQWFVGCNVSHVVTEGTSIQRYLGYSSNLITPLWILKTAKEKQVQRLVNMSVDLARQVGLMLEDVHNGLSGKEAVKQKVHDELQAGKSDIGYEDRQQIVNLAKNGVRSRRGRRMQTCQTPIRPITPNNLLDSICWSISEATSTASIYTDSFSAEDPNDNHTSIFFDAKGDAKDSDTSFSNSTRPLTESEKSELVFKNHFLTILFPVDRFSEIGPSSRTFFNINGFTCLQVLDHIHAFYQENMSSHEIEVAIHTDSRHADKLRSVYSSKETAERGYAVFKRTEFLGSRTSFEMLKRVSGDNNSNVYELLLRA 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03868 538 SMART BRCT_7 193 269 IPR001357 -
Vifa2g03868 538 SMART BRCT_7 47 127 IPR001357 -
Vifa2g03868 538 Pfam Family of unknown function (DUF6699) 362 522 IPR046522 -
Vifa2g03868 538 Pfam twin BRCT domain 53 119 IPR001357 -
Vifa2g03868 538 SUPERFAMILY BRCT domain 47 138 IPR036420 -
Vifa2g03868 538 CDD BRCT_TopBP1_rpt2_like 49 127 - -
Vifa2g03868 538 PANTHER BRCT DOMAIN DNA REPAIR PROTEIN-RELATED 3 538 - -
Vifa2g03868 538 ProSiteProfiles BRCT domain profile. 191 279 IPR001357 -
Vifa2g03868 538 ProSiteProfiles BRCT domain profile. 45 137 IPR001357 -
Vifa2g03868 538 Gene3D BRCT domain 48 139 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03868 Vifa-Chr2 1128958029 1128961596 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03868 49 137 Core DNA Replication Machinery Family AT1G77320 38.202 7.12e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03868 - - gmx:100815253 868.611