Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03867 ATGGATTCATCAAACAATGATCATAATCAGAATCAAACTAAGAATCTCAAACGAACCTTCGATCAATTGTACGCAAAACCCCATGTTGAAATTTCCCCCTCTCAAGAATCCATTACAAATTTGGTTCCTAGAAGGGATCAGTCAGAGGCGTTTGAGATTGCAAAGAGGAGGAACACAATAGCAATAATGGATACAGGTTCAGGAAAAACATTGATAGCTATCATGCTTATTAAGGAAGTTGGTCAAGCTGTTAGGTCAAGTGGTGTAAAAAAGATTATTGTTTTCTTAGCTCCAACTGTTGTTTTGGTCAATCAGCAATACATGAATATTAAACATAACACAGATCTTCAAGTTGAGGAGTATCATGGGGCTAAAGGAGTTGATACATGGAATTTCGAGAGCTGGCAGAAGGAAGTTAAGGACAATGATGTAATGGTTATGACACCCCAGACTCTTTTGGATGCCTTAAGAAAAGCATTCCTGAGTATAGAAACGATATGCTTGATGGTTATTGATGAGTGTCATCAAGCATCAGGCAACCATCCCTATGCAAAAATAATGGTGGAATTTTATCATCAAGCTAATGTAAAGCCAAAGATTTTTGGGATGACAGCATCACCAATTGGTAAAAGAGGTGTTTCTTCTACTTTGGATTGTAAGTATCAGATATCAGACCTTGAAAACATCTTGGATTCTCGGAAATATACGGTTAAAGATCGGACAGAGATGGATACATGTATCCCATCTGCAAAAGAGAGTTGTAGATACTATGACCAAGCACGGTCTCCTGCTTTGAGTTTGAAGCCAAAAATTGAAGCCTCGTGGTCAAAGTGTGATGTGTTGTTATCAGATTTTAAAAGTAACTATAAGGATATGGACGATAAATTTAAGACACTGCATCAGAGGATGTCCAATGAGCTAGCAAAAATTTTATATTGCCTCGAAGATCTTGGACTGTTGTGTGCTCGCGAGGCTGCTAAAATATGTCATCAGAAATTCTCCAAAATTTACGGAGAGTGTGAAGTTTACAGAAAAGCCAATCTTCAGTGTGTAACTGTCATTGAAGAAGTAATCCAAATAATCGAAGAGTCCCTCCATCTTGCTGATGAAGTGATTTTGGATGTTGAATTTGATTTTTCAAAGGCAGTGGACATAGGATACATATCACCAAAATTACTTGAACTCATTAAACTCTTCCAATCATTTGGAGAACCTAGTCAGTTATTGTGCCTCATTTTCGTGGAAAGAATCATTGCGGCTAAGGTGATTGAAATATTTGTAAAAAAAGTTCCTCAAATATCTCATCTCACAGTTGCCTATGTAACTGGAAGCAATACATCAGCTGATGCACTGGCTCGTAACAGGCAGAAAGAGATAATGGATTCTTTTCGATCCGGAAAGATCAATCTTCTCTTTACTACCGATGTACTTGAGGAAGGAATCCATGTGCCAAACTGCTCCTGTGTGATACGTTTTGACCTCCCCACGACTGTTTGTAGTTATATCCAATCTCGTGGAAGATCTAGGCGTGCTAACTCCCAATTCATCTTGATGATCGAGAGGGGGAACTTGAAGCAAAGAAATCAGCTTTTTGACATAATCAGGGGGGAGCGTTCCATGACTGATGCAGCTGCTAGCAAAGACAATGAATCTAATTTAAGGGCGTTCACAGTAAGGAAAACAGAGGCATACTATGTGGATTCTACTGGAGCATCAGTAAATTTAGATTCTAGTGTTAGTCTTGTAAATCAGTATTGCGAAAAGCTCCCACGAGACAAGTACTCCTCGGCAAAGCCCAATTTTGAGTTACTACCTGTGGAGGGAGGGTACCAGTGTAAACTAAGTTTACCACCTAATGCAGCTTTCCAAACATTAGTTGGGTCTTCAGGAAAAGACATGCGTTTGGCAAAGAGTCTTGTATGTTTAGAAGCTTGTAAGAAGCTGCATCAAATGGGTGCCTTAAATGATCATCTTGTTCCTTTCACTGAAGATCCTTCAGAAGCAGACATTATAAAAAACAAGGAATTAACTTCAGGTGCAGGCGCAGGTGCAGGAACCACAAAAAGAAAGGAGTTACACGGAACGACCGGCATTCGGGCATTATGTGGTTCATGGGGGGACAAACCTGACGGAGCCAAATTTCATGGGTATAAATTTGAATTCCAATGTAATATTGTCCATGAAATTTACTCTGGGTTTGTTCTACTGGTTGAGTCAAAGCTTGACGATGATGTGGGAAGTATGGAATTAGATCTGTATTTAATCTCAAAGATGGTGAAGACTTTTATCATTCCATGTGGGGAGGTTGACTTGGATGCTGAACAGGTGGCGAAAGCAAAAAGCTTCCATGAGCTTTTTTTCAATGGTTTATTTGGGAGATTGATTCGTAAATCCAAAACAGCGAAAGGAGAAAGGGAGTTTTTACTTCAGAAAGACACAAATTTATTGTGGAATCCAAAAAACTCGTATTTGCTTCTACCACTTGAGAAGTCAAATGATATATGTTCGGGGTCTTTGCAAATACACTGGTCTGCAATCAGTTCTTGTTCTTCTGCTATTGAGTTTGTAAGGCGTAAATTTCCGTTGGTTGCTGAAGATTCTGATGATACCGGTTCATCAGAAATGGAACGCGAAAGCACTAACATGTTTCACTTTGCCAATGCTGTCGCTGATGTTAGTAACATTAAAGACACGGTAGCTTTGGCCGTTCATACTGGAAAAATTTATTGTATCATTGATGTTGTTGATAATTCATCTGCTGAAAGTCCTTTTGATGGAAACAATGACAAGTCGGGAAAGATAATGACGTTCTCTCAATATTTCAAGGAAAGGTATCGAATCACTCTAAAACATCCAGAACAGCCTTTGTTAAGGCTGAAGCAAGGTCATAATGCGCATAACCTTTTTTTGAACACTCCCGAGGAAGGGGAAAAGTCATCACAAGTTGGTCCGGTAAATCCAAAGGTGCCAATACATGTTCACATGCCACCTGAGCTTCTTTGCCTTCTTGATGTTAAAAGAGACGTGTTGAGGTCAATGTACTTGCTACCGTCTCTTATGTACCGTATTGAATCTTTCATGTTATCCAGTCAGCTTAGAGCAGAGATAAATGGTCACACCGACAATTTCAAGATACCTAGCTCTCTGATTCTTGAAGCACTTACAACTTTAAGAAGCTGTGAAAAGTTTTCTATGGAACGTCTTGAGTTGCTAGGAGATTCTGTTTTGAAATATGCTGTCAGCTGTCATCTCTTTCTTAAATATCCTAAGAAGCATGAAGGACATTTATCTGCCAAAAGACAATGGGCTGTTCGTAATTCAACCCTACACAAGCTTGGAATAGATCGCAAATTACAGGGATATATTCGAGATTCCGCATTTGAACCACGTCGTTGGATTGCTCCTGGACAAGACTCTATACATACTGCTCCTTGTGATTGTGGGTTGGAAACCCTGGAGGTTCCTTTAGATGTAAAGTTCATTACGGAAGATCGACAAGTTGTGGTTGGGAAGTTGTGTGACAGGGGTCACCGCTGGATGTGTTCAAAGACTATTGCCGACTGTGTTGAAGCTCTTATAGGAGCATACCACGTTGGTGGTGGATTGATGGCTTCACTTCACGTGATGAAATGGCTTGGAATTGATTCGGAACTTGAACTATCCATGGTTGAAGGAGCCATTACTACTGCATCTCTACATACATATAAGCCAAAAGTAAATGAGATTGCAAGCTTGGAAACAAAAATTGGATACGAATTTTCTGTCAAGGGACTCTTAGTGGAGGCAACCACACATCTATCTGAGACAGAACATGGAACTGGCTGCTGCTACGAGAGGCTTGAATTCCTCGGTGACTCAGTGTTGGACCTTCTCATCACATGGCATCTATATCAGAATCACACTGAAATTGATCCGGGAGAGTTGACTGATTTGCGTTCTGCTTCTGTCAATAATGAAAGTTTTGCTCAAGCTGCTGTTAGACATAACCTTCACCCACACCTTATGCATAGCTCAGGATTATTACAAGGCCAAATATCAGAATATGTGAAGGCCATTTCTGAATCAGAAGACAACACTGTATCACTCCCCGGGGTTAAAGCTCCCAAGGCACTTGGAGATCTGGTTGAGAGTATCGCTGGGGCTATACTAATTGATACCAAGCTCGACCTTGATCAAGTGTGGAAGGTTTTCAATCCTCTGTTATCTCCCATTGTTACTCCCGACAAACTTGAACTGCCTCCATTGCGTGAATTAAATCAGTTATGTGACTCTCTCGGCTATTTTGTAAAAGTAAAAGTAAAGTGCGATAAGAAGGGATTCATGGACCATGTTGTGCTTAGTGTACAACTGCCAAATGCTCTTCTGGTTCGAGACGGAAGGGGGCCGAATAAAAAATCTGCCAAAGGAGATGCTGCTTATCATTTGTTGAAGGACCTTGAGAAAAGGGGAATTTCGTATAGCTCGGCCAAGGGTAAAAGAGTAATAGATTTCAGTACTCCTGCTTGTCAAGCTGAAGAACAACCCCCAAAGCCAGTAGCACATAAAAAGCCGAAATTGGACAAATCTAACTTAACAGCAAAGGAATCTACTTCTGATGTGAAAGAGACTTCCAGTGATTCCTCTGATTTTAGTGGTTCCGTTCCAGTTATTTTATCGATTAATATGAAGAAGGGAGGACCACGGAGCCTACTATATGACTTGTGCAAGAGAAGGCAGTGGCCATTGCCTTCATTTGATTCAACCGAATACAGAGACAGAACTCAATTTCAATCGGTTGAAGGCCTGGAAGGAAGCAAAGGAACAAACTGTTTTGTGTCAAAAATAACCTTGTGCATACCGGATCATGGTAATATAGAATGCAACGGAGAGGCTAGAAGTGATAAGAAGAGCTCCTTTGATTCTGCTGCAGTTCAAGTGCTCTATGAGCTTGAACGCCTCGGAAAAGTTAAAATCGGTGATGTTTCCCAATAA 4971 0.4047 MDSSNNDHNQNQTKNLKRTFDQLYAKPHVEISPSQESITNLVPRRDQSEAFEIAKRRNTIAIMDTGSGKTLIAIMLIKEVGQAVRSSGVKKIIVFLAPTVVLVNQQYMNIKHNTDLQVEEYHGAKGVDTWNFESWQKEVKDNDVMVMTPQTLLDALRKAFLSIETICLMVIDECHQASGNHPYAKIMVEFYHQANVKPKIFGMTASPIGKRGVSSTLDCKYQISDLENILDSRKYTVKDRTEMDTCIPSAKESCRYYDQARSPALSLKPKIEASWSKCDVLLSDFKSNYKDMDDKFKTLHQRMSNELAKILYCLEDLGLLCAREAAKICHQKFSKIYGECEVYRKANLQCVTVIEEVIQIIEESLHLADEVILDVEFDFSKAVDIGYISPKLLELIKLFQSFGEPSQLLCLIFVERIIAAKVIEIFVKKVPQISHLTVAYVTGSNTSADALARNRQKEIMDSFRSGKINLLFTTDVLEEGIHVPNCSCVIRFDLPTTVCSYIQSRGRSRRANSQFILMIERGNLKQRNQLFDIIRGERSMTDAAASKDNESNLRAFTVRKTEAYYVDSTGASVNLDSSVSLVNQYCEKLPRDKYSSAKPNFELLPVEGGYQCKLSLPPNAAFQTLVGSSGKDMRLAKSLVCLEACKKLHQMGALNDHLVPFTEDPSEADIIKNKELTSGAGAGAGTTKRKELHGTTGIRALCGSWGDKPDGAKFHGYKFEFQCNIVHEIYSGFVLLVESKLDDDVGSMELDLYLISKMVKTFIIPCGEVDLDAEQVAKAKSFHELFFNGLFGRLIRKSKTAKGEREFLLQKDTNLLWNPKNSYLLLPLEKSNDICSGSLQIHWSAISSCSSAIEFVRRKFPLVAEDSDDTGSSEMERESTNMFHFANAVADVSNIKDTVALAVHTGKIYCIIDVVDNSSAESPFDGNNDKSGKIMTFSQYFKERYRITLKHPEQPLLRLKQGHNAHNLFLNTPEEGEKSSQVGPVNPKVPIHVHMPPELLCLLDVKRDVLRSMYLLPSLMYRIESFMLSSQLRAEINGHTDNFKIPSSLILEALTTLRSCEKFSMERLELLGDSVLKYAVSCHLFLKYPKKHEGHLSAKRQWAVRNSTLHKLGIDRKLQGYIRDSAFEPRRWIAPGQDSIHTAPCDCGLETLEVPLDVKFITEDRQVVVGKLCDRGHRWMCSKTIADCVEALIGAYHVGGGLMASLHVMKWLGIDSELELSMVEGAITTASLHTYKPKVNEIASLETKIGYEFSVKGLLVEATTHLSETEHGTGCCYERLEFLGDSVLDLLITWHLYQNHTEIDPGELTDLRSASVNNESFAQAAVRHNLHPHLMHSSGLLQGQISEYVKAISESEDNTVSLPGVKAPKALGDLVESIAGAILIDTKLDLDQVWKVFNPLLSPIVTPDKLELPPLRELNQLCDSLGYFVKVKVKCDKKGFMDHVVLSVQLPNALLVRDGRGPNKKSAKGDAAYHLLKDLEKRGISYSSAKGKRVIDFSTPACQAEEQPPKPVAHKKPKLDKSNLTAKESTSDVKETSSDSSDFSGSVPVILSINMKKGGPRSLLYDLCKRRQWPLPSFDSTEYRDRTQFQSVEGLEGSKGTNCFVSKITLCIPDHGNIECNGEARSDKKSSFDSAAVQVLYELERLGKVKIGDVSQ 1656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03867 1656 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 391 554 IPR001650 -
Vifa2g03867 1656 MobiDBLite consensus disorder prediction 1509 1535 - -
Vifa2g03867 1656 FunFam Endoribonuclease dicer-like 1 573 669 - -
Vifa2g03867 1656 FunFam Endoribonuclease dicer-like protein 38 277 - -
Vifa2g03867 1656 SMART riboneu5 1048 1221 IPR000999 GO:0004525|GO:0006396
Vifa2g03867 1656 SMART riboneu5 1257 1410 IPR000999 GO:0004525|GO:0006396
Vifa2g03867 1656 Gene3D paz domain 873 1004 - -
Vifa2g03867 1656 Gene3D - 384 543 IPR027417 -
Vifa2g03867 1656 Pfam Type III restriction enzyme, res subunit 35 207 IPR006935 GO:0003677|GO:0005524|GO:0016787
Vifa2g03867 1656 SMART helicmild6 424 512 IPR001650 -
Vifa2g03867 1656 Pfam Ribonuclease III domain 1066 1199 IPR000999 GO:0004525|GO:0006396
Vifa2g03867 1656 Pfam Ribonuclease III domain 1278 1386 IPR000999 GO:0004525|GO:0006396
Vifa2g03867 1656 SMART ultradead3 39 243 IPR014001 -
Vifa2g03867 1656 SMART PAZ_2_a_3 869 1028 IPR003100 GO:0005515
Vifa2g03867 1656 Gene3D Ribonuclease III domain 1238 1409 IPR036389 GO:0004525|GO:0006396
Vifa2g03867 1656 ProSitePatterns Ribonuclease III family signature. 1278 1286 IPR000999 GO:0004525|GO:0006396
Vifa2g03867 1656 FunFam Endoribonuclease dicer-like 1 1236 1408 - -
Vifa2g03867 1656 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 578 668 IPR005034 GO:0016891
Vifa2g03867 1656 Gene3D - 1566 1645 - -
Vifa2g03867 1656 Gene3D - 37 272 IPR027417 -
Vifa2g03867 1656 Pfam PAZ domain 883 1024 IPR003100 GO:0005515
Vifa2g03867 1656 Pfam Helicase conserved C-terminal domain 407 512 IPR001650 -
Vifa2g03867 1656 FunFam Endoribonuclease dicer-like 1 382 545 - -
Vifa2g03867 1656 SUPERFAMILY RNase III domain-like 1241 1407 IPR036389 GO:0004525|GO:0006396
Vifa2g03867 1656 CDD RIBOc 1258 1408 IPR000999 GO:0004525|GO:0006396
Vifa2g03867 1656 CDD SF2_C_dicer 387 519 - -
Vifa2g03867 1656 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1459 1481 IPR014720 -
Vifa2g03867 1656 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 50 225 IPR014001 -
Vifa2g03867 1656 ProSiteProfiles PAZ domain profile. 894 1004 IPR003100 GO:0005515
Vifa2g03867 1656 Pfam Dicer dimerisation domain 578 663 - -
Vifa2g03867 1656 SUPERFAMILY RNase III domain-like 1042 1218 IPR036389 GO:0004525|GO:0006396
Vifa2g03867 1656 CDD RIBOc 1048 1212 IPR000999 GO:0004525|GO:0006396
Vifa2g03867 1656 SUPERFAMILY PAZ domain 893 1003 IPR036085 GO:0005515
Vifa2g03867 1656 Gene3D Ribonuclease III domain 1031 1212 IPR036389 GO:0004525|GO:0006396
Vifa2g03867 1656 FunFam Dicer-like 104 1024 1213 - -
Vifa2g03867 1656 CDD DEXHc_dicer 43 239 - -
Vifa2g03867 1656 Gene3D Dicer dimerisation domain 573 671 IPR038248 -
Vifa2g03867 1656 ProSiteProfiles Ribonuclease III family domain profile. 1242 1387 IPR000999 GO:0004525|GO:0006396
Vifa2g03867 1656 PANTHER DICER-RELATED 57 1486 - -
Vifa2g03867 1656 MobiDBLite consensus disorder prediction 1500 1544 - -
Vifa2g03867 1656 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 91 519 IPR027417 -
Vifa2g03867 1656 ProSiteProfiles Ribonuclease III family domain profile. 1029 1201 IPR000999 GO:0004525|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03867 Vifa-Chr2 1128739751 1128748949 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03867 442 510 Eukaryotic Initiation Factors Gene Family AT1G72730 46.377 1.63e-07 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03867 K11592 - gmx:100806831 2320.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03867 2 1128739751 1128748949 Vifa2g03867 2 1128739751 1128748949 ECH
Vifa4g04221 4 1343462116 1343470986 Vifa2g03867 2 1128739751 1128748949 ECH