Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03866 ATGGATTCATCAAACAATGATCATAATCAGAATCAAACTAAGAATCTCAAACGAACCTTCGATCAATTGTACGCAAAACCCCATGTTGAAATTTCCCCCTCTCAAGAATCCATTACAAATTTGGTTCCTAGAAGGGATCAGTCAGAGGCGTTTGAGATTGCAAAGAGGAGGAACACAATAGCAATAATGGATACAGGTTCAGGAAAAACATTGATAGCTATCATGCTTATTAAGGAAGTTGGTCAAGCTGTTAGGTCAAGTGGTGTAAAAAAGATTATTGTTTTCTTAGCTCCAACTGTTGTTTTGGTCAATCAGCAATACATGAATATTAAACATAACACAGATCTTCAAGTTGAGGAGTATCATGGGGCTAAAGGAGTTGATACATGGAATTTCGAGAGCTGGCAGAAGGAAGTTAAGGACAATGATGTAATGGTTATGACACCCCAGACTCTTTTGGATGCCTTAAGAAAAGCATTCCTGAGTATAGAAACGATATGCTTGATGGTTATTGATGAGTGTCATCAAGCATCAGGCAACCATCCCTATGCAAAAATAATGGTGGAATTTTATCATCAAGCTAATGTAAAGCCAAAGATTTTTGGGATGACAGCATCACCAATTGGTAAAAGAGGTGTTTCTTCTACTTTGGATTGTAAGTATCAGATATCAGACCTTGAAAACATCTTGGATTCTCGGAAATATACGGTTAAAGATCGGACAGAGATGGATACATGTATCCCATCTGCAAAAGAGAGTTGTAGATACTATGACCAAGCACGGTCTCCTGCTTTGAGTTTGAAGCCAAAAATTGAAGCCTCGTGGTCAAAGTGTGATGTGTTGTTATCAGATTTTAAAAGTAACTATAAGGATATGGACGATAAATTTAAGACACTGCATCAGAGGATGTCCAATGAGCTAGCAAAAATTTTATATTGCCTCGAAGATCTTGGACTGTTGTGTGCTCGCGAGGCTGCTAAAATATGTCATCAGAAATTCTCCAAAATTTACGGAGAGTGTGAAGTTTACAGAAAAGCCAATCTTCAGTGTGTAACTGTCATTGAAGAAGTAATCCAAATAATCGAAGAGTCCCTCCATCTTGCTGATGAAGTGATTTTGGATGTTGAATTTGATTTTTCAAAGGCAGTGGACATAGGATACATATCACCAAAATTACTTGAACTCATTAAACTCTTCCAATCATTTGGAGAACCTAGTCAGTTATTGTGCCTCATTTTCGTGGAAAGAATCATTGCGGCTAAGGTGATTGAAATATTTGTAAAAAAAGTTCCTCAAATATCTCATCTCACAGTTGCCTATGTAACTGGAAGCAATACATCAGCTGATGCACTGGCTCGTAACAGGCAGAAAGAGATAATGGATTCTTTTCGATCCGGAAAGATCAATCTTCTCTTTACTACCGATGTACTTGAGGAAGGAATCCATGTGCCAAACTGCTCCTGTGTGATACGTTTTGACCTCCCCACGACTGTTTGTAGTTATATCCAATCTCGTGGAAGATCTAGGCGTGCTAACTCCCAATTCATCTTGATGATCGAGAGGGGGAACTTGAAGCAAAGAAATCAGCTTTTTGACATAATCAGGGGGGAGCGTTCCATGACTGATGCAGCTGCTAGCAAAGACAATGAATCTAATTTAAGGGCGTTCACAGTAAGGAAAACAGAGGCATACTATGTGGATTCTACTGGAGCATCAGTAAATTTAGATTCTAGTGTTAGTCTTGTAAATCAGTATTGCGAAAAGCTCCCACGAGACAAGTACTCCTCGGCAAAGCCCAATTTTGAGTTACTACCTGTGGAGGGAGGGTACCAGTGTAAACTAAGTTTACCACCTAATGCAGCTTTCCAAACATTAGTTGGGTCTTCAGGAAAAGACATGCGTTTGGCAAAGAGTCTTGTATGTTTAGAAGCTTGTAAGAAGCTGCATCAAATGGGTGCCTTAAATGATCATCTTGTTCCTTTCACTGAAGATCCTTCAGAAGCAGACATTATAAAAAACAAGGAATTAACTTCAGGTGCAGGCGCAGGTGCAGGAACCACAAAAAGAAAGGAGTTACACGGAACGACCGGCATTCGGGCATTATGTGGTTCATGGGGGGACAAACCTGACGGAGCCAAATTTCATGGGTATAAATTTGAATTCCAATGTAATATTGTCCATGAAATTTACTCTGGGTTTGTTCTACTGGTTGAGTCAAAGCTTGACGATGATGTGGGAAGTATGGAATTAGATCTGTATTTAATCTCAAAGATGGTGAAGACTTTTATCATTCCATGTGGGGAGGTTGACTTGGATGCTGAACAGGTGGCGAAAGCAAAAAGCTTCCATGAGCTTTTTTTCAATGGTTTATTTGGGAGATTGATTCGTAAATCCAAAACAGCGAAAGGAGAAAGGGAGTTTTTACTTCAGAAAGACACAAATTTATTGTGGAATCCAAAAAACTCGTATTTGCTTCTACCACTTGAGAAGTCAAATGATATATGTTCGGGGTCTTTGCAAATACACTGGTCTGCAATCAGTTCTTGTTCTTCTGCTATTGAGTTTGTAAGGCGTAAATTTCCGTTGGTTGCTGAAGATTCTGATGATACCGGTTCATCAGAAATGGAACGCGAAAGCACTAACATGTTTCACTTTGCCAATGCTGTCGCTGATGTTAGTAACATTAAAGACACGGTAGCTTTGGCCGTTCATACTGGAAAAATTTATTGTATCATTGATGTTGTTGATAATTCATCTGCTGAAAGTCCTTTTGATGGAAACAATGACAAGTCGGGAAAGATAATGACGTTCTCTCAATATTTCAAGGAAAGGTATCGAATCACTCTAAAACATCCAGAACAGCCTTTGTTAAGGCTGAAGCAAGGTCATAATGCGCATAACCTTTTTTTGAACACTCCCGAGGAAGATGCAGGGGAAAAGTCATCACAAGTTGGTCCGGTAAATCCAAAGGTGCCAATACATGTTCACATGCCACCTGAGCTTCTTTGCCTTCTTGATGTTAAAAGAGACGTGTTGAGGTCAATGTACTTGCTACCGTCTCTTATGTACCGTATTGAATCTTTCATGTTATCCAGTCAGCTTAGAGCAGAGATAAATGGTCACACCGACAATTTCAAGATACCTAGCTCTCTGATTCTTGAAGCACTTACAACTTTAAGAAGCTGTGAAAAGTTTTCTATGGAACGTCTTGAGTTGCTAGGAGATTCTGTTTTGAAATATGCTGTCAGCTGTCATCTCTTTCTTAAATATCCTAAGAAGCATGAAGGACATTTATCTGCCAAAAGACAATGGGCTGTTCGTAATTCAACCCTACACAAGCTTGGAATAGATCGCAAATTACAGGGATATATTCGAGATTCCGCATTTGAACCACGTCGTTGGATTGCTCCTGGACAAGACTCTATACATACTGCTCCTTGTGATTGTGGGTTGGAAACCCTGGAGGTTCCTTTAGATGTAAAGTTCATTACGGAAGATCGACAAGTTGTGGTTGGGAAGTTGTGTGACAGGGGTCACCGCTGGATGTGTTCAAAGACTATTGCCGACTGTGTTGAAGCTCTTATAGGAGCATACCACGTTGGTGGTGGATTGATGGCTTCACTTCACGTGATGAAATGGCTTGGAATTGATTCGGAACTTGAACTATCCATGGTTGAAGGAGCCATTACTACTGCATCTCTACATACATATAAGCCAAAAGTAAATGAGATTGCAAGCTTGGAAACAAAAATTGGATACGAATTTTCTGTCAAGGGACTCTTAGTGGAGGCAACCACACATCTATCTGAGACAGAACATGGAACTGGCTGCTGCTACGAGAGGCTTGAATTCCTCGGTGACTCAGTGTTGGACCTTCTCATCACATGGCATCTATATCAGAATCACACTGAAATTGATCCGGGAGAGTTGACTGATTTGCGTTCTGCTTCTGTCAATAATGAAAGTTTTGCTCAAGCTGCTGTTAGACATAACCTTCACCCACACCTTATGCATAGCTCAGGATTATTACAAGGCCAAATATCAGAATATGTGAAGGCCATTTCTGAATCAGAAGACAACACTGTATCACTCCCCGGGGTTAAAGCTCCCAAGGCACTTGGAGATCTGGTTGAGAGTATCGCTGGGGCTATACTAATTGATACCAAGCTCGACCTTGATCAAGTGTGGAAGGTTTTCAATCCTCTGTTATCTCCCATTGTTACTCCCGACAAACTTGAACTGCCTCCATTGCGTGAATTAAATCAGTTATGTGACTCTCTCGGCTATTTTGTAAAAGTAAAAGTAAAGTGCGATAAGAAGGGATTCATGGACCATGTTGTGCTTAGTGTACAACTGCCAAATGCTCTTCTGGTTCGAGACGGAAGGGGGCCGAATAAAAAATCTGCCAAAGGAGATGCTGCTTATCATTTGTTGAAGGACCTTGAGAAAAGGGGAATTTCGTATAGCTCGGCCAAGGGTAAAAGAGTAATAGATTTCAGTACTCCTGCTTGTCAAGCTGAAGAACAACCCCCAAAGCCAGTAGCACATAAAAAGCCGAAATTGGACAAATCTAACTTAACAGCAAAGGAATCTACTTCTGATGTGAAAGAGACTTCCAGTGATTCCTCTGATTTTAGTGGTTCCGTTCCAGTTATTTTATCGATTAATATGAAGAAGGGAGGACCACGGAGCCTACTATATGACTTGTGCAAGAGAAGGCAGTGGCCATTGCCTTCATTTGATTCAACCGAATACAGAGACAGAACTCAATTTCAATCGGTTGAAGGCCTGGAAGGAAGCAAAGGAACAAACTGTTTTGTGTCAAAAATAACCTTGTGCATACCGGATCATGGTAATATAGAATGCAACGGAGAGGCTAGAAGTGATAAGAAGAGCTCCTTTGATTCTGCTGCAGTTCAAGTGCTCTATGAGCTTGAACGCCTCGGAAAAGTTAAAATCGGTGATGTTTCCCAATAA 4977 0.4049 MDSSNNDHNQNQTKNLKRTFDQLYAKPHVEISPSQESITNLVPRRDQSEAFEIAKRRNTIAIMDTGSGKTLIAIMLIKEVGQAVRSSGVKKIIVFLAPTVVLVNQQYMNIKHNTDLQVEEYHGAKGVDTWNFESWQKEVKDNDVMVMTPQTLLDALRKAFLSIETICLMVIDECHQASGNHPYAKIMVEFYHQANVKPKIFGMTASPIGKRGVSSTLDCKYQISDLENILDSRKYTVKDRTEMDTCIPSAKESCRYYDQARSPALSLKPKIEASWSKCDVLLSDFKSNYKDMDDKFKTLHQRMSNELAKILYCLEDLGLLCAREAAKICHQKFSKIYGECEVYRKANLQCVTVIEEVIQIIEESLHLADEVILDVEFDFSKAVDIGYISPKLLELIKLFQSFGEPSQLLCLIFVERIIAAKVIEIFVKKVPQISHLTVAYVTGSNTSADALARNRQKEIMDSFRSGKINLLFTTDVLEEGIHVPNCSCVIRFDLPTTVCSYIQSRGRSRRANSQFILMIERGNLKQRNQLFDIIRGERSMTDAAASKDNESNLRAFTVRKTEAYYVDSTGASVNLDSSVSLVNQYCEKLPRDKYSSAKPNFELLPVEGGYQCKLSLPPNAAFQTLVGSSGKDMRLAKSLVCLEACKKLHQMGALNDHLVPFTEDPSEADIIKNKELTSGAGAGAGTTKRKELHGTTGIRALCGSWGDKPDGAKFHGYKFEFQCNIVHEIYSGFVLLVESKLDDDVGSMELDLYLISKMVKTFIIPCGEVDLDAEQVAKAKSFHELFFNGLFGRLIRKSKTAKGEREFLLQKDTNLLWNPKNSYLLLPLEKSNDICSGSLQIHWSAISSCSSAIEFVRRKFPLVAEDSDDTGSSEMERESTNMFHFANAVADVSNIKDTVALAVHTGKIYCIIDVVDNSSAESPFDGNNDKSGKIMTFSQYFKERYRITLKHPEQPLLRLKQGHNAHNLFLNTPEEDAGEKSSQVGPVNPKVPIHVHMPPELLCLLDVKRDVLRSMYLLPSLMYRIESFMLSSQLRAEINGHTDNFKIPSSLILEALTTLRSCEKFSMERLELLGDSVLKYAVSCHLFLKYPKKHEGHLSAKRQWAVRNSTLHKLGIDRKLQGYIRDSAFEPRRWIAPGQDSIHTAPCDCGLETLEVPLDVKFITEDRQVVVGKLCDRGHRWMCSKTIADCVEALIGAYHVGGGLMASLHVMKWLGIDSELELSMVEGAITTASLHTYKPKVNEIASLETKIGYEFSVKGLLVEATTHLSETEHGTGCCYERLEFLGDSVLDLLITWHLYQNHTEIDPGELTDLRSASVNNESFAQAAVRHNLHPHLMHSSGLLQGQISEYVKAISESEDNTVSLPGVKAPKALGDLVESIAGAILIDTKLDLDQVWKVFNPLLSPIVTPDKLELPPLRELNQLCDSLGYFVKVKVKCDKKGFMDHVVLSVQLPNALLVRDGRGPNKKSAKGDAAYHLLKDLEKRGISYSSAKGKRVIDFSTPACQAEEQPPKPVAHKKPKLDKSNLTAKESTSDVKETSSDSSDFSGSVPVILSINMKKGGPRSLLYDLCKRRQWPLPSFDSTEYRDRTQFQSVEGLEGSKGTNCFVSKITLCIPDHGNIECNGEARSDKKSSFDSAAVQVLYELERLGKVKIGDVSQ 1658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03866 1658 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 391 554 IPR001650 -
Vifa2g03866 1658 FunFam Endoribonuclease dicer-like 1 573 669 - -
Vifa2g03866 1658 SMART PAZ_2_a_3 869 1030 IPR003100 GO:0005515
Vifa2g03866 1658 FunFam Endoribonuclease dicer-like protein 38 277 - -
Vifa2g03866 1658 ProSitePatterns Ribonuclease III family signature. 1280 1288 IPR000999 GO:0004525|GO:0006396
Vifa2g03866 1658 MobiDBLite consensus disorder prediction 1502 1546 - -
Vifa2g03866 1658 SUPERFAMILY RNase III domain-like 1243 1409 IPR036389 GO:0004525|GO:0006396
Vifa2g03866 1658 Gene3D Ribonuclease III domain 1240 1411 IPR036389 GO:0004525|GO:0006396
Vifa2g03866 1658 SUPERFAMILY RNase III domain-like 1044 1220 IPR036389 GO:0004525|GO:0006396
Vifa2g03866 1658 ProSiteProfiles Ribonuclease III family domain profile. 1244 1389 IPR000999 GO:0004525|GO:0006396
Vifa2g03866 1658 SMART riboneu5 1050 1223 IPR000999 GO:0004525|GO:0006396
Vifa2g03866 1658 SMART riboneu5 1259 1412 IPR000999 GO:0004525|GO:0006396
Vifa2g03866 1658 PANTHER DICER-RELATED 57 1488 - -
Vifa2g03866 1658 ProSiteProfiles Ribonuclease III family domain profile. 1031 1203 IPR000999 GO:0004525|GO:0006396
Vifa2g03866 1658 Gene3D - 384 543 IPR027417 -
Vifa2g03866 1658 Pfam Type III restriction enzyme, res subunit 35 207 IPR006935 GO:0003677|GO:0005524|GO:0016787
Vifa2g03866 1658 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1461 1483 IPR014720 -
Vifa2g03866 1658 MobiDBLite consensus disorder prediction 1511 1537 - -
Vifa2g03866 1658 Gene3D - 1568 1647 - -
Vifa2g03866 1658 SMART helicmild6 424 512 IPR001650 -
Vifa2g03866 1658 SMART ultradead3 39 243 IPR014001 -
Vifa2g03866 1658 Pfam Helicase conserved C-terminal domain 407 512 IPR001650 -
Vifa2g03866 1658 Pfam Ribonuclease III domain 1280 1388 IPR000999 GO:0004525|GO:0006396
Vifa2g03866 1658 Pfam Ribonuclease III domain 1068 1201 IPR000999 GO:0004525|GO:0006396
Vifa2g03866 1658 CDD RIBOc 1050 1214 IPR000999 GO:0004525|GO:0006396
Vifa2g03866 1658 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 578 668 IPR005034 GO:0016891
Vifa2g03866 1658 SUPERFAMILY PAZ domain 893 1005 IPR036085 GO:0005515
Vifa2g03866 1658 FunFam Endoribonuclease dicer-like 1 382 545 - -
Vifa2g03866 1658 Gene3D paz domain 873 1006 - -
Vifa2g03866 1658 CDD SF2_C_dicer 387 519 - -
Vifa2g03866 1658 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 50 225 IPR014001 -
Vifa2g03866 1658 Pfam Dicer dimerisation domain 578 663 - -
Vifa2g03866 1658 Gene3D Ribonuclease III domain 1033 1214 IPR036389 GO:0004525|GO:0006396
Vifa2g03866 1658 CDD RIBOc 1260 1410 IPR000999 GO:0004525|GO:0006396
Vifa2g03866 1658 CDD DEXHc_dicer 43 239 - -
Vifa2g03866 1658 Gene3D Dicer dimerisation domain 573 671 IPR038248 -
Vifa2g03866 1658 Gene3D - 37 272 IPR027417 -
Vifa2g03866 1658 FunFam Endoribonuclease dicer-like 1 1238 1410 - -
Vifa2g03866 1658 FunFam Dicer-like 104 1026 1215 - -
Vifa2g03866 1658 Pfam PAZ domain 883 1026 IPR003100 GO:0005515
Vifa2g03866 1658 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 91 519 IPR027417 -
Vifa2g03866 1658 ProSiteProfiles PAZ domain profile. 894 1006 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03866 Vifa-Chr2 1128739751 1128748949 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03866 442 510 Eukaryotic Initiation Factors Gene Family AT1G72730 46.377 1.63e-07 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03866 K11592 - gmx:100806831 2328.9