Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03861 ATGAGTTCTAAAAAGATTACATGGAAGTCTATTGTTTTGATCTTAGGTTGTTACAAGACAACATACTCCTTGGAGGAATCAAAAAAACAAGGCTCATTCCAAAGGTTGTCCTTGTCTGATATAAGCATTTCTAACTCTAGTATTCAAGCTATTGAGGATCTTTCAGTTTCATTAGCCGGTTCAAAGCTTTACATGTTCAATCTTGAGGAGTTAAGAGAAGCAACACATGGTTTCTCATGGAGTAATTTGTTAGGTGAAGGTGGTTTTGGTCCTGTTTATAAGGGTTTTGTTGATGATAAACTCAGACACGGTTTGAAGGCTCAACCTGTTGCTGTCAAACGGTTGAACTTGGATGGATCACAAGGTCACAGAGAGTGGTTGGCGGAGATTATATTTCTTGGACAGCTACGACATCCACATCTTGTGAAGTTAATTGGATATTGTTGTGAGGAAGAGCAGCGGCTTTTGGTGTATGAATATATGGCTAGAGGAAGCTTGGAGAATCAATTATTCAGAAGATATTCTGCTACTTTACCATGGTCGACGAGGATGAAAATTGCATTAGGTGCGGCTAAGGGACTAGCTTTTCTTCATGAAGTAGATAAACCTGTAATATATAGAGATTTTAAGACTTCAAATATATTACTGGATTCGGATTATACTGCTAAATTATCAGATCTTGGATTAGCTAAAGATGGTCCTGAAGGAGAAGAAACACATGTGACAACAACTTGCATAATGGGAACAAAAGGCTATGCTGCCCCGGAGTATATCATGTCAGGTCACCTTTCTACCAAAAGTGATGTGTATAGCTATGGAGTAGTGTTGTTGGAATTGCTTACAGGAAAGAGAGTAGTGGACAAAACCAGATCAAATAAAGAGAGACACCTTGTGGAATGGGCAAAACCTATTTTGAGAGATCAAAGAAAGTTTCTTAATATCATAGACTCAAAATTAGAGGGACAGTTTTCTATTAAAGGAGCTTTGAAGGTTGCTGCATTGACTTATAAATGCTTAAGCCACAATCCTACTCCAAGGCCTAATATGAGTGATGTGGTAAAGATATTGGAATCACTTCAAGACTTTGATGATGTGATTATAAGACCATTTGTTTATGTGGCTGTTAGTTAA 1131 0.3767 MSSKKITWKSIVLILGCYKTTYSLEESKKQGSFQRLSLSDISISNSSIQAIEDLSVSLAGSKLYMFNLEELREATHGFSWSNLLGEGGFGPVYKGFVDDKLRHGLKAQPVAVKRLNLDGSQGHREWLAEIIFLGQLRHPHLVKLIGYCCEEEQRLLVYEYMARGSLENQLFRRYSATLPWSTRMKIALGAAKGLAFLHEVDKPVIYRDFKTSNILLDSDYTAKLSDLGLAKDGPEGEETHVTTTCIMGTKGYAAPEYIMSGHLSTKSDVYSYGVVLLELLTGKRVVDKTRSNKERHLVEWAKPILRDQRKFLNIIDSKLEGQFSIKGALKVAALTYKCLSHNPTPRPNMSDVVKILESLQDFDDVIIRPFVYVAVS 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03861 376 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Vifa2g03861 376 Pfam Protein tyrosine and serine/threonine kinase 81 356 IPR001245 GO:0004672|GO:0006468
Vifa2g03861 376 SUPERFAMILY Protein kinase-like (PK-like) 57 358 IPR011009 -
Vifa2g03861 376 FunFam Serine/threonine-protein kinase BIK1 45 160 - -
Vifa2g03861 376 Gene3D Transferase(Phosphotransferase) domain 1 161 367 - -
Vifa2g03861 376 PANTHER OS01G0588500 PROTEIN-RELATED 47 360 - -
Vifa2g03861 376 ProSiteProfiles Protein kinase domain profile. 78 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03861 376 Gene3D Phosphorylase Kinase; domain 1 39 160 - -
Vifa2g03861 376 CDD STKc_IRAK 84 359 - -
Vifa2g03861 376 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 161 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03861 Vifa-Chr2 1126664567 1126666061 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03861 66 356 Glycoside Hydrolase AT3G07070 51.361 2.12e-96 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vifa2g03861 PK_Tyr_Ser-Thr 8.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03861 - - gmx:100805771 625.165