Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03860 ATGAGTTCTAAAAAGATTACATGGAAGTCTATTGTTTTGATCTTAGGTTGTTACAAGACAACATACTCCTTGGAGGAATCAAAAAAACAAGGCTCATTCCAAAGGTTGTCCTTGTCTGATATAAGCATTTCTAACTCTAGTATTCAAGCTATTGAGGATCTTTCAGTTTCATTAGCCGGTTCAAAGCTTTACATGTTCAATCTTGAGGAGTTAAGAGAAGCAACACATGGTTTCTCATGGAGTAATTTGTTAGGTGAAGGTGGTTTTGGTCCTGTTTATAAGGGTTTTGTTGATGATAAACTCAGACACGGTTTGAAGGCTCAACCTGTTGCTGTCAAACGGTTGAACTTGGATGGATCACAAGGTCACAGAGAGTGGTTGGCGGAGATTATATTTCTTGGACAGCTACGACATCCACATCTTGTGAAGTTAATTGGATATTGTTGTGAGGAAGAGCAGCGGCTTTTGGTGTATGAATATATGGCTAGAGGAAGCTTGGAGAATCAATTATTCAGAACAGGATATTCTGCTACTTTACCATGGTCGACGAGGATGAAAATTGCATTAGGTGCGGCTAAGGGACTAGCTTTTCTTCATGAAGTAGATAAACCTGTAATATATAGAGATTTTAAGACTTCAAATATATTACTGGATTCGGATTATACTGCTAAATTATCAGATCTTGGATTAGCTAAAGATGGTCCTGAAGGAGAAGAAACACATGTGACAACAACTTGCATAATGGGAACAAAAGGCTATGCTGCCCCGGAGTATATCATGTCAGGTCACCTTTCTACCAAAAGTGATGTGTATAGCTATGGAGTAGTGTTGTTGGAATTGCTTACAGGAAAGAGAGTAGTGGACAAAACCAGATCAAATAAAGAGAGACACCTTGTGGAATGGGCAAAACCTATTTTGAGAGATCAAAGAAAGTTTCTTAATATCATAGACTCAAAATTAGAGGGACAGTTTTCTATTAAAGGAGCTTTGAAGGTTGCTGCATTGACTTATAAATGCTTAAGCCACAATCCTACTCCAAGGCCTAATATGAGTGATGTGGTAAAGATATTGGAATCACTTCAAGACTTTGATGATGTGATTATAAGACCATTTGTTTATGTGGCTGTTAGTTAA 1134 0.3774 MSSKKITWKSIVLILGCYKTTYSLEESKKQGSFQRLSLSDISISNSSIQAIEDLSVSLAGSKLYMFNLEELREATHGFSWSNLLGEGGFGPVYKGFVDDKLRHGLKAQPVAVKRLNLDGSQGHREWLAEIIFLGQLRHPHLVKLIGYCCEEEQRLLVYEYMARGSLENQLFRTGYSATLPWSTRMKIALGAAKGLAFLHEVDKPVIYRDFKTSNILLDSDYTAKLSDLGLAKDGPEGEETHVTTTCIMGTKGYAAPEYIMSGHLSTKSDVYSYGVVLLELLTGKRVVDKTRSNKERHLVEWAKPILRDQRKFLNIIDSKLEGQFSIKGALKVAALTYKCLSHNPTPRPNMSDVVKILESLQDFDDVIIRPFVYVAVS 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03860 377 ProSiteProfiles Protein kinase domain profile. 78 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03860 377 FunFam Serine/threonine-protein kinase BIK1 45 160 - -
Vifa2g03860 377 Gene3D Transferase(Phosphotransferase) domain 1 161 368 - -
Vifa2g03860 377 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 161 368 - -
Vifa2g03860 377 Pfam Protein tyrosine and serine/threonine kinase 81 357 IPR001245 GO:0004672|GO:0006468
Vifa2g03860 377 SUPERFAMILY Protein kinase-like (PK-like) 57 359 IPR011009 -
Vifa2g03860 377 PANTHER OS01G0588500 PROTEIN-RELATED 47 361 - -
Vifa2g03860 377 CDD STKc_IRAK 84 360 - -
Vifa2g03860 377 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Vifa2g03860 377 Gene3D Phosphorylase Kinase; domain 1 39 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03860 Vifa-Chr2 1126664567 1126666061 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03860 66 357 Glycoside Hydrolase AT3G07070 51.701 4.53e-96 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vifa2g03860 PK_Tyr_Ser-Thr 1.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03860 - - gmx:100805771 618.231