Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03855 ATGCTTATGCTTGAGGTTGTTCAGGGTGCGGTTATTGGTTTGCAGTGTGTTGCTTTTGACAGATTCAGCGCCATCTCATCTCTTGCCAAATTGCACAACTCATCTGATCCTAATGAGCGAGAAGTTTGTGAAATTCTCAAGGGTTTGGGAGACAATGTTAAAGAAGTTGATGCGGAGCATGTTCTGCATAACATAACAAACCCTGAAATTGCGATTCTTGCTGTTAAATACTTCCAGAAGAAGATTGAACCGGAGAGACATGTTGTTCTTTACAATGTGTTGTTTAAGCTTTTTAGAGAAATTAATGATTTTGAAAAAGCAGAGAAGGTGTTTGAGGAAATGCTGCAGAGAGGAGTCAAGCCTGATGTTGTTATGTTTTCGACTTTGATTAGGTGTGCTTCTGTTTGTTCTCTGCCTCACAAATCCGTGGAGTTGTTTGAGAGGATGCCTTCTTTTGGGTGTGAGCCGGATCATAATGTGTCGTCGTCGATGATTTATGTTTATGCTCGCACAGGTAATGTTGATATGGCTTTGAAATTGTATGATGATGCGAAAAATGAGAAGTGGCCTGTTAGGGCAGTTGCATTCTCTGCTTTGATTAAGATGTATGCTGTATTCAAGAATCTGCATCCACCATCCTGTGCAAAGGAAAGTAGCACATGCATTGGACCAACAGCGGGACAAATGACGTTTCTATTTTCTGGGTTTTGCTTACTCTTGATAGGTGCTGCAGGGATTCGACCGTGTAATTTAGCATTCGGTGTTGATCAATTCAATCCAAAAACAGAATCAGGAAAGAAAGGAATCAACAGTTTCTTCAATTGTGTGAGCTGGGCAATTGGTCTTGGAATTCCTGCTGCATTGATGTTGTTAGCTTATGTGTTATTTTTCATGGGTGATAAATTGTATGTTAAAGTAAAACCAAGTGGCAGTCCCATCAAAAGTATTGTACAAAGATGTGGCCAGACCTTATTCAGAAATCCAAAGATGGAGGAATTGATGTCATTGAGACTTATGTTTTCTGGAACTTACACGAACCTGTTCGACGCCAGTAGCAGCAGCAGGTCTATATGTTCATCTCCGGATCGGTCCATACGCTTGTGCAGAATGGAATTACGGTGGTTTCCCTCTTTTGTATGGTTGTTTCTTGGATTCTACTGGGTAACTGCTGGTGGTCAGAGTTTGACAAGGGTTTCACCTCAGCTTTACTGGCTCTGTATCACATTTCTTGCTTTCGACGTTGCAATTGTTGTGATTTGTGTTACTGCTGCGTGTCTCATTGGAATTGCCGTTTGCTGTTTTCTTCCATGCATACTTGCTATTTTGTATGCAGTGACTGATCAGGAAGGGGCAACCAAGGAAGAGATTGACCTGTTGCCAAAATACAAGTTCAGAATAATAAAGGAACTTAAAAAAGAAGGTGATGCCCAAGAATCATCGAGAGGAGTGATGACGGAATGTGACAGTGGTTCAGCTTCTGAGCATATTATTGCCTTAGAAGATGCAGAATGTTGTATCTGCCTTTCGGCCTATGATGATGAAGCTGAACTTAGAGAACTTCCTTGCAATCACCATTTTCATTGCACATGCATTGACAAATGGCTGCTCATCAATGCCACCTGTCCTCTCTGCAAGTTTAACATTTTGAGCACTGATAACCTCCAAGAAGTTTGA 1674 0.4128 MLMLEVVQGAVIGLQCVAFDRFSAISSLAKLHNSSDPNEREVCEILKGLGDNVKEVDAEHVLHNITNPEIAILAVKYFQKKIEPERHVVLYNVLFKLFREINDFEKAEKVFEEMLQRGVKPDVVMFSTLIRCASVCSLPHKSVELFERMPSFGCEPDHNVSSSMIYVYARTGNVDMALKLYDDAKNEKWPVRAVAFSALIKMYAVFKNLHPPSCAKESSTCIGPTAGQMTFLFSGFCLLLIGAAGIRPCNLAFGVDQFNPKTESGKKGINSFFNCVSWAIGLGIPAALMLLAYVLFFMGDKLYVKVKPSGSPIKSIVQRCGQTLFRNPKMEELMSLRLMFSGTYTNLFDASSSSRSICSSPDRSIRLCRMELRWFPSFVWLFLGFYWVTAGGQSLTRVSPQLYWLCITFLAFDVAIVVICVTAACLIGIAVCCFLPCILAILYAVTDQEGATKEEIDLLPKYKFRIIKELKKEGDAQESSRGVMTECDSGSASEHIIALEDAECCICLSAYDDEAELRELPCNHHFHCTCIDKWLLINATCPLCKFNILSTDNLQEV 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03855 557 CDD RING-H2_RNF6-like 503 545 - -
Vifa2g03855 557 Gene3D Tetratricopeptide repeat domain 20 160 IPR011990 GO:0005515
Vifa2g03855 557 PANTHER TARGET OF ERK KINASE MPK-1 374 551 - -
Vifa2g03855 557 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 122 156 IPR002885 -
Vifa2g03855 557 SUPERFAMILY RING/U-box 494 552 - -
Vifa2g03855 557 Pfam POT family 213 329 IPR000109 GO:0016020|GO:0022857|GO:0055085
Vifa2g03855 557 Pfam PPR repeat family 87 132 IPR002885 -
Vifa2g03855 557 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 87 121 IPR002885 -
Vifa2g03855 557 NCBIfam pentatricopeptide repeat 89 123 IPR002885 -
Vifa2g03855 557 NCBIfam pentatricopeptide repeat 124 157 IPR002885 -
Vifa2g03855 557 NCBIfam pentatricopeptide repeat 162 189 IPR002885 -
Vifa2g03855 557 ProSiteProfiles Zinc finger RING-type profile. 504 545 IPR001841 -
Vifa2g03855 557 Pfam Ring finger domain 503 545 IPR001841 -
Vifa2g03855 557 Gene3D MFS general substrate transporter like domains 191 400 IPR036259 -
Vifa2g03855 557 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 481 553 IPR013083 -
Vifa2g03855 557 Pfam PPR repeat 162 185 IPR002885 -
Vifa2g03855 557 SMART ring_2 504 544 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03855 Vifa-Chr2 1125171646 1125179330 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03855 377 556 C3H Transcription Factor Family AT1G68070 54.645 1.59e-62 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03855 - - tpra:123891576 327.791