Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03853 ATGAGTTTGCGCAAGGGCTCCAAGGTTTGGGTTCCCGATAGGGACTTTGCTTGGCTACCTGCTGAAGTAATAGAATCTTCCGATAAGCAAGTTCGCGTTGAAACGGATTCCGGCAACAAGGTTGTTGTTGTTGTTGTTGCTCCGGAGAAACTGTTTCCCAGGGATGCAGATGAAGATGAACACGGGGGAGTCGAAGATATGACGAGGCTGGCTTATTTGAATGAACCGGGAGTGTTGTACAATATTCGGAGAAGATACATGCTTAATGACATATATACATATACGGGGAGCATTTTAATTGCTGTTAATCCATTCACAAAGCTTCCTCATTTGTACAATAACCACATGATGGAGCAGTATAAGGGAGCTCCATTTGGTGAACTCAGTCCACATGTATTCGCCGTTGCTGATGCATCGTACAGAGCAATGATGAATGAAGGTCATAGCCAATCTATTTTGGTCAGTGGTGAAAGTGGTGCTGGGAAAACTGAAACAACAAAATTGATTATGCAGTATCTTACCTTTGTTGGTGGGCGTGCTGTTTGTGATGATAGATCAGTTGAACAAAAAGTTCTTGAGTCGAATCCGCTGTTAGAGGCATTTGGCAATGCAAGGACTGTTAGGAATGACAATTCAAGCCGTTTTGGGAAGTTCGTTGAAATTCAGTTTGATTCAAAGGGTAAAATATCTGGTGCTGCAATTAGAACTTACTTATTGGAAAGATCACGAGTAGTGCAGACTACAGATCCTGAAAGAAATTATCACTGCTTTTATCAGTTGTGTGCATCTGAAAGGGATGCAGAGAAGTATAAGTTAGGACATCCAGGCCACTTCCACTATTTGAATCAAAGTAAAGTTTATGAATTAGATGGTGTTAGCAGTGCCGAAGAATACATAAAGACGAGAAGATCAATGGATATTGTTGGTATTAATCATGAGGATCAGGAAGCCATATTTTGCACCTTAGCTGCAATTTTGCATCTTGGAAATGTTGAATTTTCTCCTGGGAAAGAGCACGACTCGTCAATAATAAAGGATGAGAAATCAATATTTCATTTGCAGATGGTTGCTAATCTTTTCAAGTGTGATCTGAACCTACTGCAAGCAACATTATGTACTCGTTCAATACAAACCCGCGAAGGAAATATTGTCAAAGCTCTTGATTGTAATGCCGCTGTTGCTGGCAGGGATGTCTTGGCGAAAACCGTTTATGCCCGTTTGTTTGATTGGCTTGTTGATAAGATTAATAAAGCGGTTGGGCAAGATATCAATTCCAGGATGCAAATTGGAATATTGGATATATATGGTTTTGAGTCTTTTAAGGATAACAGTTTTGAGCAATTCTGCATCAATTTTGCAAATGAAAAGCTTCAACAACACTTTAATGAGCATGTATTCAAGATGGAGCAAGCAGAGTATAGAAAAGAAGAAATTAAATGGAGTTACATTGAGTTTATAGACAACCAAGATGTTTTAGATTTAATTGAAAAGAAGCCCATTGGTATCATTGCCCTGTTAGACGAAGCTTGCATGTTTCCAAAATCGACGCACAAAACATTCTCAACCAAGTTGTTTCAGCACTTCTTGTGCCACACTAGGTTTGGAAAGGAGAAGTTTTCAGAAACAGATTTTACTGTTTCTCATTATGCTGGAAAGGTCACATACCATACAGACACATTTATAGACAAAAATCGCGACTATGTGGTTTTAGAGCATTGTAATGTATTATCTTCTTCAAAATGCTCTTTTGTGTCTGGTCTTTTTCCTTCTTTACCGGAGGAATCTTCAAGGTCATCCTACAAGTTTTCTTCTGTGGCTTCCAGATTTAAGCAACAACTTCAAGCACTTATGGAAACACTCAAGACAACAGAGCCTCATTACATTCGATGCGTCAAGCCAAATTCCTTGAATTTACCACAAAAGTTTGAGAACACAAGTGTCTTACACCAATTACGTTGCGGGGGTGTACTTGAGGCTGTTCGGATAAGTCTGGCAGGTTACCCAACTCGAAGGACTTACTCAGAGTTTGTAGATCGCTTTGGATTAATAACTCCTGAGTTTACAGATGGAAGTTATGATGATAGAGCTACAACTCAGAAAATATTGCAAAAGCTAAAACTTGAGAATTTCCAGCTGGGTAGGACTAAAGTGTTTCTCAGGGCTGGTCAAATCGGTATTTTAGATTCTAGGCGAGCTGAAGTTTTGGACAATGCTGCAAGATGTATTCAGCGTCGGCTGCATACATTTATTGCTCACAGAGATTTCATCTCAACTCGAGTCGCTGCAGTTTCTCTTCAAGCATGCTGCAGGGGATGTATTGCAAGAAGGATATATGCTTTTAAACGGGAGACTGCAGCAGCTATCTCCATTCAGAAATATATTCGTATGGGTCTGACGAGGCGTGTTTACATTACACTGTACTCTTCTGCTATCATTATACAATCAAATGTCCGCGGTTTCACAACTCGCCAAAGATTTTTGCACAGAAAAGAACACAAAGCTGCTACTACTATTCAGGCGTATTGGAGGATGTGCAAGGTTCGGTCTGCTTTCAAACAACATCAGTTTTCAATTGTGGCAATACAATGCCTTTGGCGCTGTAAACAAGCAAAAAAACAGCTTCGTAGACTTAAACAAGAGGCTAGTGAAGCTGGCGCCTTGCGTTTAGCCAAGACTAAACTTGAAAAACAATTGGAAGAGCTCACATGGCGTTTGCATCTTGAAAAAAAATTAAGGGTGTCTAATGAAGAGGCTAAGCAAGTTGAGATTTCCAAGTTTCAGAAGACATTGGAAGCTCTGATTTGTGAATTAGATGGAGCTAAATTGGCAACTATTAATGAGTCGAATAAGAATGCAATTTTGCAAAATCAATTGCAATTATCAGAAAAGGAAAAATCTGCTTTAGAAAGAGAGCTAGTTGTAATGAATGAAGTGCGAAAGGAAAATGCTCTGATGAAGGCTTCTATGGATGCCTTGGAAAAGAAGAGCACAGCTTTGGAGCACGAGCTTGTGAATGCCCAAAAAGACCATAATGAAACCATTCAGAAAATGAGGGAGTTTGAACAGAAGAGTTCTCAACTTGCACAAAATATGAAAATTCTTGAAGAAAAGCTATTGAGTTTGGAGAATGAAAATCAAGTGCTTCGTCAGAAAGCCTCAACTGTATCTCCTAAGAGTAATCATCCTAGTTTTACAAAGTCATCATCAGAACAGAAATTCTCGAGGAAAATAGCCCTCAACACTGAGCAAAACCCAGTATATGAATCACCTACACCCACTAAACTTATGCCCTCTTTTACACGTGGCTTGTCAGATTCTCGTCGATCTAAATTAACAGCAGAAAGGCACCAGGATAACTATGAATTCCTCACTAGGTGTATCAAAGAGGATTTGGGTTTCGAAATGAGTAAGCCTGTGGCAGCTAGTATCATATACAAATGTCTTCTTCATTGGCATGCATTTGAGTCTGAGCGCACGGCCATATTTGATTACATAATTGATGGAATTAATGAAGTCATAAAAGTTAGAGATGATGACACTGTCTTGCCATATTGGCTGTCCAATACATCCGCACTTGTGTGCCTTTTACAGAGAAATGTCCGTTCAAATGTTTTTTTAACTACCACTGCTCAACGTTATGCTGGATCATCTGGCTTGACCAGCCGGATGGGGCATGCAATGAAGTCTCCATTGAAGTTAATTGGATATAATGATGGTATATCACATGTGGAGGCAAGATATCCAGCTATGCTTTTTAAACAACAACTAACTGCTTGTGTAGAGAAGATTTTTGGCCTAATACGTGATAATTTGAAAAAGGAACTTTCTCCACTTCTTGCATTATGTATTCAGGCACCCAAAACAGGACGGGCACAAAGTGGAAAATCATCTAGGTCTCCTGGGGGGCTTCCTCAACAACCACTTGGCGGCCAATGGGACAACATCATAAATTTTTTGAATTCACTCTTGAACCAATTATGTGCAAATAATATACCATCCTTCTTCATCCGCAAGCTAGTTACACAGGTCTTTTCCTTTATCAATATGACGCTGTTCAACAGTCTTCTTTTGCGGCGTGAATGTTGTACTTTCTCAAATGGTGAATATGTAAAGTCTGGTCTTGCAGAACTGGAGAAATGGATAGTTAATGCAAATGAAGAGTATGCAGGTACATCCTGGCATGAGCTGAATTATATAAGACAAGCTGTTGGGTTTCTGGTAATACATCAGAAGAGGAAGAAATCTTTGGAAGAAATTAGGCAGGATCTTTGTCCTGCATTAACTGTGAGGCAAATCTATCGAATTAGTACTATGTACTGGGATGACAAGTATGGAACCCAGAGTGTATCCAACGAGGTAGTTGGTGAAATGAGGGAAATTGTGAGCAAAGACAATCAGAGTTTGACCTCAAATTCGTTCCTGATGGATGACGATATGAGTATTCCTTTTTCTGCTGAAGACATAGATATGGCGATCCCTGCTGTGAATACTGATGATATTGAGCTCCCATCATTCTTGTGTGAATATCCCTGTGCCCAGTTTCTAGTTTTGCATGAGTAA 4560 0.3971 MSLRKGSKVWVPDRDFAWLPAEVIESSDKQVRVETDSGNKVVVVVVAPEKLFPRDADEDEHGGVEDMTRLAYLNEPGVLYNIRRRYMLNDIYTYTGSILIAVNPFTKLPHLYNNHMMEQYKGAPFGELSPHVFAVADASYRAMMNEGHSQSILVSGESGAGKTETTKLIMQYLTFVGGRAVCDDRSVEQKVLESNPLLEAFGNARTVRNDNSSRFGKFVEIQFDSKGKISGAAIRTYLLERSRVVQTTDPERNYHCFYQLCASERDAEKYKLGHPGHFHYLNQSKVYELDGVSSAEEYIKTRRSMDIVGINHEDQEAIFCTLAAILHLGNVEFSPGKEHDSSIIKDEKSIFHLQMVANLFKCDLNLLQATLCTRSIQTREGNIVKALDCNAAVAGRDVLAKTVYARLFDWLVDKINKAVGQDINSRMQIGILDIYGFESFKDNSFEQFCINFANEKLQQHFNEHVFKMEQAEYRKEEIKWSYIEFIDNQDVLDLIEKKPIGIIALLDEACMFPKSTHKTFSTKLFQHFLCHTRFGKEKFSETDFTVSHYAGKVTYHTDTFIDKNRDYVVLEHCNVLSSSKCSFVSGLFPSLPEESSRSSYKFSSVASRFKQQLQALMETLKTTEPHYIRCVKPNSLNLPQKFENTSVLHQLRCGGVLEAVRISLAGYPTRRTYSEFVDRFGLITPEFTDGSYDDRATTQKILQKLKLENFQLGRTKVFLRAGQIGILDSRRAEVLDNAARCIQRRLHTFIAHRDFISTRVAAVSLQACCRGCIARRIYAFKRETAAAISIQKYIRMGLTRRVYITLYSSAIIIQSNVRGFTTRQRFLHRKEHKAATTIQAYWRMCKVRSAFKQHQFSIVAIQCLWRCKQAKKQLRRLKQEASEAGALRLAKTKLEKQLEELTWRLHLEKKLRVSNEEAKQVEISKFQKTLEALICELDGAKLATINESNKNAILQNQLQLSEKEKSALERELVVMNEVRKENALMKASMDALEKKSTALEHELVNAQKDHNETIQKMREFEQKSSQLAQNMKILEEKLLSLENENQVLRQKASTVSPKSNHPSFTKSSSEQKFSRKIALNTEQNPVYESPTPTKLMPSFTRGLSDSRRSKLTAERHQDNYEFLTRCIKEDLGFEMSKPVAASIIYKCLLHWHAFESERTAIFDYIIDGINEVIKVRDDDTVLPYWLSNTSALVCLLQRNVRSNVFLTTTAQRYAGSSGLTSRMGHAMKSPLKLIGYNDGISHVEARYPAMLFKQQLTACVEKIFGLIRDNLKKELSPLLALCIQAPKTGRAQSGKSSRSPGGLPQQPLGGQWDNIINFLNSLLNQLCANNIPSFFIRKLVTQVFSFINMTLFNSLLLRRECCTFSNGEYVKSGLAELEKWIVNANEEYAGTSWHELNYIRQAVGFLVIHQKRKKSLEEIRQDLCPALTVRQIYRISTMYWDDKYGTQSVSNEVVGEMREIVSKDNQSLTSNSFLMDDDMSIPFSAEDIDMAIPAVNTDDIELPSFLCEYPCAQFLVLHE 1519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03853 1519 ProSiteProfiles IQ motif profile. 783 809 IPR000048 GO:0005515
Vifa2g03853 1519 SMART MYSc_2a 56 733 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa2g03853 1519 CDD MYSc_Myo11 76 720 IPR036018 -
Vifa2g03853 1519 SMART iq_5 782 804 IPR000048 GO:0005515
Vifa2g03853 1519 SMART iq_5 853 875 IPR000048 GO:0005515
Vifa2g03853 1519 SMART iq_5 805 827 IPR000048 GO:0005515
Vifa2g03853 1519 SMART iq_5 757 779 IPR000048 GO:0005515
Vifa2g03853 1519 SMART iq_5 830 852 IPR000048 GO:0005515
Vifa2g03853 1519 Gene3D - 666 733 - -
Vifa2g03853 1519 SMART DIL_2 1338 1445 IPR002710 -
Vifa2g03853 1519 Pfam Myosin N-terminal SH3-like domain 6 43 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vifa2g03853 1519 Gene3D - 438 623 - -
Vifa2g03853 1519 Coils Coil 867 887 - -
Vifa2g03853 1519 CDD MyosinXI_CBD 1114 1486 IPR037975 GO:0007015
Vifa2g03853 1519 Gene3D Myosin VI head, motor domain, U50 subdomain 311 601 - -
Vifa2g03853 1519 Gene3D - 252 309 - -
Vifa2g03853 1519 ProSiteProfiles IQ motif profile. 831 860 IPR000048 GO:0005515
Vifa2g03853 1519 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 782 881 IPR027417 -
Vifa2g03853 1519 ProSiteProfiles Myosin motor domain profile. 62 732 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa2g03853 1519 Gene3D Kinesin motor domain 65 662 IPR036961 -
Vifa2g03853 1519 PANTHER MYOSIN 805 1452 - -
Vifa2g03853 1519 MobiDBLite consensus disorder prediction 1049 1106 - -
Vifa2g03853 1519 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 50 782 IPR027417 -
Vifa2g03853 1519 Pfam DIL domain 1339 1442 IPR002710 -
Vifa2g03853 1519 FunFam Myosin heavy chain 252 306 - -
Vifa2g03853 1519 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 4 56 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vifa2g03853 1519 MobiDBLite consensus disorder prediction 1049 1110 - -
Vifa2g03853 1519 ProSiteProfiles IQ motif profile. 806 835 IPR000048 GO:0005515
Vifa2g03853 1519 Gene3D - 785 832 - -
Vifa2g03853 1519 Gene3D - 833 882 - -
Vifa2g03853 1519 Gene3D - 734 784 - -
Vifa2g03853 1519 ProSiteProfiles IQ motif profile. 758 787 IPR000048 GO:0005515
Vifa2g03853 1519 Pfam Myosin head (motor domain) 64 720 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa2g03853 1519 PRINTS Myosin heavy chain signature 481 509 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa2g03853 1519 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa2g03853 1519 PRINTS Myosin heavy chain signature 196 223 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa2g03853 1519 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa2g03853 1519 PRINTS Myosin heavy chain signature 428 456 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa2g03853 1519 ProSiteProfiles Dilute domain profile. 1163 1463 IPR002710 -
Vifa2g03853 1519 Coils Coil 951 1051 - -
Vifa2g03853 1519 Pfam IQ calmodulin-binding motif 784 803 IPR000048 GO:0005515
Vifa2g03853 1519 Pfam IQ calmodulin-binding motif 832 852 IPR000048 GO:0005515
Vifa2g03853 1519 Pfam IQ calmodulin-binding motif 808 826 IPR000048 GO:0005515
Vifa2g03853 1519 Pfam IQ calmodulin-binding motif 760 778 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03853 Vifa-Chr2 1124460864 1124484784 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03853 1 1516 Myosins gene family AT4G33200 71.391 0.0 2221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03853 K10357 - gmx:100796413 2550.78