Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03823 ATGGCTACTCATCTGCTAACATTTCCCATCTCCTCCCCACCTAACCTCTCTTTCAATTACACACTCAATCTCAATCATCACCACCGCTTCATTTCTCAACTACCCTCCAAACGACGTTGCTACCGCCACCTCAACCGCCGCCATATTTCCCGCCCATATTTCCCCGTCTCGAACTCTTTCAGTACTGAAATTCGCTCACCGGAATCACCTCTTCTTCAATCCCAGTCACAAACCAAAGACTCACCGCTTCTTCTCGATGTCACCGGAATGATGTGCGGCGGCTGCGTCTCCCGAGTCAAAACCATTCTCTCCGCCGACGACCGAGTTGACTCCGTCGTGGTCAACATGTTGACCGAAACAGCAGCTGTCAAGCTTAAACGCCTCGAAGAAGAACACGCGAGCGTCGCTGAGAGCCTTGCTCTGCGACTGACCGAATGCGGGTTTCCGACTAAGAAGAGGGAGTCCGGTTTGGGAGTGGCGGAAAATGTTAGGAAGTGGAAGGAATTGGTGAAGAAGAAGGAGGAACTTCTCGCCAAGAGCCGTAACCGCGTCGCTTTCGCTTGGACTTTGGTCGCACTGTGCTGTGGATCGCATGCTTCACATATTTTTCATTCGTTCGGGATTCATATTGCTCATGGACCGGTTATGGAATTTCTTCATAACTCATATGTGAAAGGTGGATTAGCTTTGGGCGCTTTATTGGGACCTGGAAGAGAGTTACTCTTTGATGGTCTAAATGCTTTCAAGAAAGGGTCGCCAAATATGAACTCTCTCGTGGGATTTGGTTCAATAGCTGCTTTCATCATCAGTTCGATCTCATTGCTGAACCCTGAGCTGGCATGGGATGCATCATTCTTTGATGAACCGGTCATGCTTCTTGGTTTCGTGCTTCTAGGACGTTCTCTGGAAGAAAAAGCAAGGATTCAGGCGTCTAGTGATATGAATGAATTACTTTCATTGATATCTACTCAGTCAAGACTTGTCATTACATCATCAGAAGGTTCCCTATCTACTGACAATGTGCTTAGCTCTGATGCAATTTGTGTGGAAGTTCCAACTGATGATATTCGAATAGGAGACTCAGTGTTGGTGTTGCCTGGAGAAACTATTCCTATAGATGGAAGGGTTGTTGCAGGAAGAAGCGTTGTGGACGAATACATGCTTACAGGAGAATCACTTCCTGTATTTAAGGAGGAAGGCTTCACAGTTTCAGCAGGAACTATAAATTGGGATGGTCCTTTAAGGATTGAATCTTCTTCGACTGGCTCCAACACAATGATATCCAAGATTGTACGCATGGTTAGTATCACAACTTCTGTAGTGGCTTAG 1329 0.4658 MATHLLTFPISSPPNLSFNYTLNLNHHHRFISQLPSKRRCYRHLNRRHISRPYFPVSNSFSTEIRSPESPLLQSQSQTKDSPLLLDVTGMMCGGCVSRVKTILSADDRVDSVVVNMLTETAAVKLKRLEEEHASVAESLALRLTECGFPTKKRESGLGVAENVRKWKELVKKKEELLAKSRNRVAFAWTLVALCCGSHASHIFHSFGIHIAHGPVMEFLHNSYVKGGLALGALLGPGRELLFDGLNAFKKGSPNMNSLVGFGSIAAFIISSISLLNPELAWDASFFDEPVMLLGFVLLGRSLEEKARIQASSDMNELLSLISTQSRLVITSSEGSLSTDNVLSSDAICVEVPTDDIRIGDSVLVLPGETIPIDGRVVAGRSVVDEYMLTGESLPVFKEEGFTVSAGTINWDGPLRIESSSTGSNTMISKIVRMVSITTSVVA 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03823 442 FunFam Copper-transporting ATPase 1, putative 307 437 - -
Vifa2g03823 442 ProSiteProfiles Heavy-metal-associated domain profile. 81 151 IPR006121 GO:0046872
Vifa2g03823 442 Pfam E1-E2 ATPase 347 437 - -
Vifa2g03823 442 SUPERFAMILY HMA, heavy metal-associated domain 83 126 IPR036163 GO:0046872
Vifa2g03823 442 SUPERFAMILY Calcium ATPase, transduction domain A 345 434 IPR008250 -
Vifa2g03823 442 Gene3D - 74 155 - -
Vifa2g03823 442 FunFam Copper-transporting ATPase PAA2 chloroplastic 80 153 - -
Vifa2g03823 442 Gene3D - 306 437 - -
Vifa2g03823 442 Coils Coil 163 183 - -
Vifa2g03823 442 CDD HMA 85 149 IPR006121 GO:0046872
Vifa2g03823 442 PANTHER ATP7, ISOFORM B 74 435 - -
Vifa2g03823 442 Pfam Heavy-metal-associated domain 85 134 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03823 Vifa-Chr2 1122704363 1122708251 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03823 218 434 Primary Pumps ATPases AT5G44790 34.247 6.60e-27 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03823 K17686 - gmx:100127402 662.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03823 2 1122704363 1122708251 Vifa2g03823 2 1122704363 1122708251 ECH