Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03814 ATGGATGGTAATAATAAGCATCAAGGTGGTGAAGTAAGTATGATGGAGAAGAAAAGAGAAGTGGTGGTGACAATTTCAAACATGGGTGGAGAGAGCCATGCCCAAGATCATGATCATGGGTTGAAAGTGTTTGAATCTATGCCTCACTGTGAAAATGATCTTCCTTCAAAATCACCACCACCTTTAAACTATGTTTCCCCTGAGATAAGGTTCACTCCAGGCCCAAATAAACCCCCAAAAGCTCCCACTACAAACCTTACCACAAGAAAGTCTTTTGTAAGATCAGTGTATTCCAAGCCCAAATCAAGATTTGGTGAACAGCCTTACCCTATTGATGGAAACCTTTTTGAAGAGAATTTTGTTTCATCAAATTTGCAAGAAGAATTAGCTGCTAGTTCTCCTTATAGGAACTCATTCAATAAAGGTTCATATTCGCCTAATAGCGAGGCCGGAATGGTTAATCGAACTGCTTCGTTTACTTCTGTTGTCACGCCTAGAACACCTATGATGACATCTCCATACTCTTCTGATGATGAGGATCCTGATGAGATTATTTACAAGAAAGTTGAATTTAGTAAAGGCAATCGTAAGATACTAACGACTAAGGTTTCAATCGGGTTGGTCGTGTTTGTGAGCATTGCAGGTTGCTTATTAGTTAGCTTAGCAGTTGAGGAAGTTAGAAGGACAAAGATTTGGAGTTTAGGGCTTTGGAGGTGGTGTATGCTTGCGATGGTGACCTTTTGTGGCATGCTAGTTACTAAATGGTTCATGCACTTTGTTGTTTTCTTGATTGAAATGAACTTCTTGTTGAGGAAAAAGGTGCTTTATTTTGTCCATGGAATGAAGACTTGTGTCCAGGTTTTCATTTGGATTAGTTTGGTTCTTCTCACATGGACGCTTGTAATCCATCGCGGGATTCAGCGATCTAAATTGGCCGCAAAGATTATGAATGATGTAACATGGACTCTTGTTTCCCTTCTCATTGGAGCATTTCTGTGGGTTATAAAGACATTGTTGCTAAAGATTTTGGCATCAAATTTCCATGTGAAATCTTTCTTTGATCGAATTCAAGAATCGATCTTCCATCAATATGTTCTGCAAACTCTCTCTGGGCCTCCACTTATGGAAGAGGGTGAGAAAATCGGCGGATGTCAAAGTTTTGGTCGTTTTAGTTTCACGAGTACAACCGGTAAAGATGGCACAAAGAAAGAGGTTATCGATATGGCAAAACTTCACAAGATGAAGCAGGATAAAGTTTCCGCATGGACTATGAAGATTTTGGTAGATGCAGTGATGAATTCAAGGCTGTCCACAATCTCTAATTCACTGGATGAAAGTTTTTATGATGTAAAAAATGAACAAACTGGTAAAGAAATTACTAATGAGATGGAAGCAACTGCTGCTGCCTATTATGTTTTCAAGAATGTTGCTGCTTCCCCTTGTTGCAAGGACATTGACGAGGATGAACTCCGTCGCTTCATGATTAAGGAAGAAGTTCTTTTGGTATTTCCCCTACTGGCTGATGCAGAGACGGGGCTAATTACAAGAAAGTCTTTAGCAGATTGGGTGTTGAAGGTATATCAAGAACGCAGAGCACTCGCGCACGCCTTAAGCGACACTAAAACAGCGGTTAAACAATTAAACAAGCTTGTGACAGTGTTCCTAGTAGTGGTGACCGTAGTAGTGTGGCTTCTTCTAATGGAGATTGCAACAACAAAAGTCCTTGTATTCCTCTCATCGCAGCTAGTACTTGCAGCTTTCATGTTTGGAAACACATGCAAGAATATATTCGAATCCATCATCTTCGTGTTTGTAATGCATCCATTTGACGTTGGCGATCGATGTGTTATAGATGGCGTCGAGCTAATGGTTGAAGAAATGAATATATTGACAACAGTATTCTTGAAGCTTAATAATGAAAAAGTGTATTATCCAAATTCGGTGCTGGCCATGAAACCGATTAGCAATTATTACAGAAGCCCGAATATGTCTGAAGGTGTAGAGTTTTCGGTTGATTTTACGACACCAGCAGAGAAAATTGGAGCACTGAAAGAAAAAGTAAAGAGGTATTTGGAGAGGAATCCACAATACTGGCATCCATATTTTAGCTTGGTTGTGAAGGAGATTGAAAATGTAAATAAGATTAAGATGGGTCTTTATGTTAATCACACAATGAATTTTCAAGACTTTGGGGAGAAATGCAAAAGGACTAGTGAACTAGTGATGGAAGTAAAGAAGATATTTGAAGAGCTCAATATCAGATACAACCTTCTTCATCAAGGTGTTCATATCAGACAGATAGAACATGATACCAGTTAA 2319 0.3924 MDGNNKHQGGEVSMMEKKREVVVTISNMGGESHAQDHDHGLKVFESMPHCENDLPSKSPPPLNYVSPEIRFTPGPNKPPKAPTTNLTTRKSFVRSVYSKPKSRFGEQPYPIDGNLFEENFVSSNLQEELAASSPYRNSFNKGSYSPNSEAGMVNRTASFTSVVTPRTPMMTSPYSSDDEDPDEIIYKKVEFSKGNRKILTTKVSIGLVVFVSIAGCLLVSLAVEEVRRTKIWSLGLWRWCMLAMVTFCGMLVTKWFMHFVVFLIEMNFLLRKKVLYFVHGMKTCVQVFIWISLVLLTWTLVIHRGIQRSKLAAKIMNDVTWTLVSLLIGAFLWVIKTLLLKILASNFHVKSFFDRIQESIFHQYVLQTLSGPPLMEEGEKIGGCQSFGRFSFTSTTGKDGTKKEVIDMAKLHKMKQDKVSAWTMKILVDAVMNSRLSTISNSLDESFYDVKNEQTGKEITNEMEATAAAYYVFKNVAASPCCKDIDEDELRRFMIKEEVLLVFPLLADAETGLITRKSLADWVLKVYQERRALAHALSDTKTAVKQLNKLVTVFLVVVTVVVWLLLMEIATTKVLVFLSSQLVLAAFMFGNTCKNIFESIIFVFVMHPFDVGDRCVIDGVELMVEEMNILTTVFLKLNNEKVYYPNSVLAMKPISNYYRSPNMSEGVEFSVDFTTPAEKIGALKEKVKRYLERNPQYWHPYFSLVVKEIENVNKIKMGLYVNHTMNFQDFGEKCKRTSELVMEVKKIFEELNIRYNLLHQGVHIRQIEHDTS 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03814 772 SUPERFAMILY Sm-like ribonucleoproteins 597 657 IPR010920 -
Vifa2g03814 772 Pfam Mechanosensitive ion channel 548 754 IPR006685 GO:0016020|GO:0055085
Vifa2g03814 772 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 16 767 IPR016688 -
Vifa2g03814 772 PIRSF Memb_At2g17000 2 771 IPR016688 -
Vifa2g03814 772 Gene3D - 608 657 IPR023408 -
Vifa2g03814 772 FunFam Predicted mechanosensitive ion channel 608 657 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03814 Vifa-Chr2 1118390475 1118393185 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03814 48 764 Mechanosensitive Ion Channel Family AT5G12080 56.552 0.0 799
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03814 K22048 - gmx:100803107 1065.06