Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03813 ATGGATGGTAATAATAAGCATCAAGGTGGTGGAGTAAGCATGATGGAGAAGAAGGGTGAAGTGGTGGTGGGGATTCCAAATGTGGGTGGAGAGAGTCATGACTTTGATCATGATCATGGGTTGAAGCTGTTTGAATCTATGCCTCAAAGTGAAAATGAGCTTCCTTCAAAGTCACCACCTTTAGACTGTGCTTCCCCTGAGATAAGGTTCACCCCAAGTCCTAATAAGCCCCCAAGATATCCCACTACAAATGTGAATCTTACCAAGAGAAAATCTTTTGTAAGATCGGTGTATTCTAAACCCAAATCGAGATTTGGTGAACAACCTTACCATGTTGATGGAACCCTTCTAGAAGAGAATGTTTTGCAAGAACAGTTGGCGGTTAGTTCATCTTATAGGAGCTCATTCAATAAAGGTTCACATTCATCCAATTACAAATCTGAATCGGTTAATAGAAGTGTTTCAATTGCGTCTTTCCTCACTACTAGAACATCTTGGAGGGCATCTCCAAGTCATGCTGGTGAGGAGGATCTTGATGAAATTATTTACAAGAAAGTTGAGTTTGGTAAAGGCAAGCATAAGAGACTAACAACTAGGACTACAATTGAATTGTTTGTGTTTGCCATGATTGCGGGGAACATACTGGCTAGCTTGACTGTTGAGGAACTGAGAAGGATACATATGTGGAGTTTGCGGCTTTGGAGGTGGTGGGTGCTTGCGATGGTGACCTTTTGTGGCATGTTAGTTACCAAATGGTTCATGCACATTGTTGTTTTCTTGATTGAAATGAACTTTTTGTTGAGGAAAAAGGTGCTTTATTTTGTCCATGGAATGAAGAAATGTGTTCAGGTTTTCATTTGGATCGGTTTGGTTCTCCTCACATGGGTGCTTTTTATCAATCACGGGGTCCCGCGATCTAAATTGGCTGAAAAGATTTTAGATGGGGTAACATGGACTCTTGTTTCCCTTCTAATTGGAGCATTTTTGTGGGTCGTAAAGACATTGTTGCTGAAGATTTTGGCTTCGAATTTCCATGTGAAATCTTTCTTTGATCGAATTCAAGAATCAATCTTCCATCAATATGTTCTGCAAACTCTCTCTGGGCCTCCACTTCTGGATGAGGCGGAGAGGATCGGGAGATCGCCGAGGTTGAGCCATTTTAGTTTCCGGAGTATTACCAATAAAGGTGACACAAAGAAAGAGGTTATTGATATGGCAAAGCTTCACAGGATGAAGCAAGAGAAAGTATCCTCGTGGACCATGAAGATTTTGGTAGATTCAGTGATGAATTCAAGGCTGTCAACAATCTCTAGCTCACTAGATGAAAGTTTTTATGATAAAGAAAATAAACAAACTGATAAAGAAATTACAAATGAGATGGAAGCAACTGCTGCAGCCTATCATGTTTTCAGAAATGTCGCTGCTTCCCCTAGTTGCATGGACATTGACGAGAATGAACTCCGTAGATTCATGATTAAGGAAGAAGTTCCTTGGGTATTTCCTCTACTGGCACAGGCAGAGACAGGGCTAATTACCAGAAAATCTTTAACAGATTGGGTGTTGAAGGTATATCAAGAACGCAGAGCACTCGCACACGCCTTAAGCGACACTAAAACAGCTGTTAAACAATTAAACAAGCTTGTGACAGTGGTCGTAGTAATTGTGACCATACTAGTGTGGCTTCTTCTTATGGAAATTGCAACAACAAAAGTACTTTTATTCATTGCATCGCAGCTAGTAATTGCATCTTTCATGTTTGCAAACACATGCAAGAATATATTTGAAGCCATCATCTTTGTGTTTATAATGCATCCATTCGACGTTGGCGATCGATGTGTTGTAGATGGTGTCGTGCTATTGGTTGAAGAAATGAATCTATTGACAACCGTATTCTTGAAACTTAATCATGAAAAGGTGTATTATCCAAACTCTGTCCTGGCCGTAAAACCCATTAGCAATTATTACAGAAGCCCAGATATGACTGATCCTTTAGAGTTCTCGATTGATTTTATGACACCAGCAGAGAAAATTGGAGCTCTGAATGAAAAAATAAAGAGGTATTTGGAAAGGAATCCACAACACTGGCATCCTAATTTCGGCTTGTTTGTTAGGGAGATTGAAAATGTAAATAGGATTAAGATGAGTCTTTTTGTTACTCACACAATGAACTTCCAAGAGGTTGCGGTGAAACTCAGGCGGAAAAGTGAACTAGTGATGGAAGTAAAGAGAATATTTGAAGAGCTCAAGATCAGATACAACCTTCTTCCACAAGCTGTTCATCTCAGACACACAGAACCTGATATCAGTTAA 2310 0.3991 MDGNNKHQGGGVSMMEKKGEVVVGIPNVGGESHDFDHDHGLKLFESMPQSENELPSKSPPLDCASPEIRFTPSPNKPPRYPTTNVNLTKRKSFVRSVYSKPKSRFGEQPYHVDGTLLEENVLQEQLAVSSSYRSSFNKGSHSSNYKSESVNRSVSIASFLTTRTSWRASPSHAGEEDLDEIIYKKVEFGKGKHKRLTTRTTIELFVFAMIAGNILASLTVEELRRIHMWSLRLWRWWVLAMVTFCGMLVTKWFMHIVVFLIEMNFLLRKKVLYFVHGMKKCVQVFIWIGLVLLTWVLFINHGVPRSKLAEKILDGVTWTLVSLLIGAFLWVVKTLLLKILASNFHVKSFFDRIQESIFHQYVLQTLSGPPLLDEAERIGRSPRLSHFSFRSITNKGDTKKEVIDMAKLHRMKQEKVSSWTMKILVDSVMNSRLSTISSSLDESFYDKENKQTDKEITNEMEATAAAYHVFRNVAASPSCMDIDENELRRFMIKEEVPWVFPLLAQAETGLITRKSLTDWVLKVYQERRALAHALSDTKTAVKQLNKLVTVVVVIVTILVWLLLMEIATTKVLLFIASQLVIASFMFANTCKNIFEAIIFVFIMHPFDVGDRCVVDGVVLLVEEMNLLTTVFLKLNHEKVYYPNSVLAVKPISNYYRSPDMTDPLEFSIDFMTPAEKIGALNEKIKRYLERNPQHWHPNFGLFVREIENVNRIKMSLFVTHTMNFQEVAVKLRRKSELVMEVKRIFEELKIRYNLLPQAVHLRHTEPDIS 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03813 769 PIRSF Memb_At2g17000 10 768 IPR016688 -
Vifa2g03813 769 MobiDBLite consensus disorder prediction 46 84 - -
Vifa2g03813 769 SUPERFAMILY Sm-like ribonucleoproteins 595 654 IPR010920 -
Vifa2g03813 769 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 81 764 IPR016688 -
Vifa2g03813 769 FunFam Predicted mechanosensitive ion channel 605 654 - -
Vifa2g03813 769 Pfam Mechanosensitive ion channel 545 751 IPR006685 GO:0016020|GO:0055085
Vifa2g03813 769 Gene3D - 605 654 IPR023408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03813 Vifa-Chr2 1117700840 1117703588 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03813 48 761 Mechanosensitive Ion Channel Family AT5G12080 57.778 0.0 810
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03813 K22048 - gmx:100803107 1046.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03813 2 1117700840 1117703588 Vifa2g03813 2 1117700840 1117703588 ECH