Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03812 ATGGATGGTAATAATAAGCATCAAGGTGGTGGAGTTAGCATGATGGAGAAGAAAGGAGAAATGGTGGATGGGATTCCAAATGTGGGTGGAGAGAGTCATGACTTTGATCATGATCATGATCATGGGTTGAAGCTGTTTGAATTTATGCCTCAATGTGAAAATGAACTTGCTTCAAAGTCACCACCTTTAGACTCTGCTTCCCCTGAGATAAGGTTCACCCCTAGTCAAAATAAGCCCCCAAGACATCCCACTACAAATGCAAATCTTACCAAGAGAAAATCTTTTCTGAGATCACTGTATTCTAAACCCAAATCAAGATTTGGTGAACAGCCTTACCCTATTGAGGGAACCTTTCTAGAAGAGAATGTTTTGCAAGAACAGTTAGCGGTTAGTTCATCTTATAGGAACTCGTTTAATAAAGGTTCACATTCATCCAATTACAAATCTGAATCGCTTAATAGAAGTCTTTCGATTGCGTCTTTCCTCACTACTAGAACATCTTGGAGGGCATCTCCAAGTCATGCTGGTGAGGAGGATCTTGATGAAATTATTTACAAGAAAGTTGAGTTTAGTAAAGGCAAGCATAAGAGACTAACAACTAGGACTACAATTGAATTGTTTGTGTTTGCGATGATTGCGGGGAACATACTGGCTAGCTTGACTGTTGAGGAACTGAGAAGGATACATATGTGGAGTTTGCGGCTTTGGAGGTGGTGGGTGCTTGCGATGGTGACCTTTTGTGGCATGTTAGTTACCAAATGGTTCATGCACATTGTTGTTTTCTTGATTGAAATGAACTTTTTGTTGAGGAAAAAGGTGCTTTATTTTGTCCATGGAATGAAGAAATGTGTTCAGGTTTTCATTTGGATCGGTTTAGTTCTCCTCACATGGGTGTTTTTTATCAATCACGGGGTCCCGCGATCTAAATTGGCTGAAAAGATTTTAGATGGGGTAACATGGACTCTTGTTTCCCTTCTAATTGGAGCATTTTTGTGGGTCCTAAAGACATTGTTGCTGAAGATTTTGGCTTCGAATTTCCATGTGAAATCTTTCTTTGATCGAATTCAAGAATCAATCTTCCATCAATATGTTCTGCAAACTCTCTCTGGGCCTCCACTTCTGGATGAGGCAGAGAGGATCGGGAGATCGCCGAGGTTGAGCCATTTTAGTTTCCGGAGTATTACCAATAAAGGTGACACAAAGAAAGAGGTTATTGATATGGCAAAGCTTCACAGGATGAAGCAAGAGAAAGTATCCTCGTGGACCATGAAGATTTTGGTAGATTCAGTGATGAATTCAAGGCTGTCAACAATCTCTAGCTCACTAGATGAAAGTTTTTATGATAAAGAAAATAAACAAACTGATAAAGAAATTACAAATGAGATGGAAGCAACTGCTGCAGCCTATCATGTTTTCAGAAATGTCGCTGCTTCCCCTAGTTGCATGGACATTGACGAGAATGAACTCCGTAGATTCATGATTAAGGAAGAAGTTCCTTGGGTATTTCCTCTACTGGCACAGGCAGAGACAGGGCTAATTACCAGAAAATCTTTAACAGATTGGGTGTTGAAGGTATATCAAGAACGCAGAGCACTCGCACACGCCTTAAGCGACACTAAAACAGCTGTTAAACAATTAAACAAGCTTGTGACAGTAGTCGTAGTACTTGTGACCATACTAGTGTGGCTTCTTCTTATGGAAATTGCAACAACAAAAGTACTTGTAATCATTGCAACGCAGCTAGTAGGTGCATCTTTCATGATTGGAAACACATGCAAGAATATATTTGAAGCCATCATCTTTGTCTTTATAATGCATCCATTTGACGTTGGTGATCGATGTGTTATAGATGGTGTTGAGCTATTGGTTGAAGAAATGAATATATTGACAACAGTATTCTTGAAACTTAATAATGAAAAGGTGTATTATCCGAGTTCCGTCCTCGCCATAAAACCGATTAGCAATTATTACAGAAGCCCGGATATGTGTGAAAGTGTAGAGTTTTCGGTTGATTTTACGACACCAGCAGAGAAAATTGGAGCACTGAAAGAAAAAGTAAAGAGGTATTTGGAGAGGAATCCACAATACTGGCATCCATATTTTAGCTTGGTTGTGAAGGAGATTGAAAATGTAAATAAGATTAAGATGGGTCTTTATGTTAATCACACAATGAATTTTCAAGACTTTGGGGAGAAATGCAAAAGGGCTAGTGAACTAGTGATGGAAGTAAAGAAGATATTTGAAGAACTCAATATCAGATACAACCTTCTTCCCCAAGGTGTTCATCTCAGACACATGGAACCTGATACAAGTTAA 2316 0.3916 MDGNNKHQGGGVSMMEKKGEMVDGIPNVGGESHDFDHDHDHGLKLFEFMPQCENELASKSPPLDSASPEIRFTPSQNKPPRHPTTNANLTKRKSFLRSLYSKPKSRFGEQPYPIEGTFLEENVLQEQLAVSSSYRNSFNKGSHSSNYKSESLNRSLSIASFLTTRTSWRASPSHAGEEDLDEIIYKKVEFSKGKHKRLTTRTTIELFVFAMIAGNILASLTVEELRRIHMWSLRLWRWWVLAMVTFCGMLVTKWFMHIVVFLIEMNFLLRKKVLYFVHGMKKCVQVFIWIGLVLLTWVFFINHGVPRSKLAEKILDGVTWTLVSLLIGAFLWVLKTLLLKILASNFHVKSFFDRIQESIFHQYVLQTLSGPPLLDEAERIGRSPRLSHFSFRSITNKGDTKKEVIDMAKLHRMKQEKVSSWTMKILVDSVMNSRLSTISSSLDESFYDKENKQTDKEITNEMEATAAAYHVFRNVAASPSCMDIDENELRRFMIKEEVPWVFPLLAQAETGLITRKSLTDWVLKVYQERRALAHALSDTKTAVKQLNKLVTVVVVLVTILVWLLLMEIATTKVLVIIATQLVGASFMIGNTCKNIFEAIIFVFIMHPFDVGDRCVIDGVELLVEEMNILTTVFLKLNNEKVYYPSSVLAIKPISNYYRSPDMCESVEFSVDFTTPAEKIGALKEKVKRYLERNPQYWHPYFSLVVKEIENVNKIKMGLYVNHTMNFQDFGEKCKRASELVMEVKKIFEELNIRYNLLPQGVHLRHMEPDTS 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03812 771 PIRSF Memb_At2g17000 4 771 IPR016688 -
Vifa2g03812 771 Gene3D - 607 656 IPR023408 -
Vifa2g03812 771 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 73 768 IPR016688 -
Vifa2g03812 771 Pfam Mechanosensitive ion channel 547 753 IPR006685 GO:0016020|GO:0055085
Vifa2g03812 771 SUPERFAMILY Sm-like ribonucleoproteins 596 656 IPR010920 -
Vifa2g03812 771 FunFam Predicted mechanosensitive ion channel 607 656 - -
Vifa2g03812 771 MobiDBLite consensus disorder prediction 56 87 - -
Vifa2g03812 771 MobiDBLite consensus disorder prediction 69 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03812 Vifa-Chr2 1117685132 1117687775 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03812 50 763 Mechanosensitive Ion Channel Family AT5G12080 56.944 0.0 807
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03812 K22048 - gmx:100803107 1038.48