Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03811 ATGGATGGTAACAATAAGAATCAAGGTGGTGAAGTAAGCATGATGGAGAAGAAAAGAGAAGTGGTGGTGACAATTTCAAACATGGGTGGCGAGAGCCATGCCCAAGATCATGATAATGGGTTGAAAGTATTTGAATCTTTGACAGAAAATGAGCTTGCTTCAAAGTCACCACCTATAAAATGTGCTTCTCCAGAGATAAGGTTCAGTCCTAGTCCAAACAAGCCCCCAAAAGCACCTACTACAAATGCAAATCTTACCAAAAGAAAATCTTTTGTAAGATCAGTGTATTCTAAGCCGAAATCAAGATTTGGTGAACAACCTTACTCTATCGAGGGAACGTATCTAGAAGAGAATGTTTTACAAGAAGAATTATCTGTTAGTTCACCTTATAGGAACTTATTCAATAAAGCATCATGTTCACCGAATAACAAATCCGGTTTGATTAATAGAAGTGTTTCGATTGCTTCTGTCGTCACTCCTAGGACACCTTTGATGGCATCTCCAGGTCCTGCTGGTGAGGATCCTGATGAAATCATTTACAAGAAAGTTGAACTTAGTAAAGGCAAGCATAAGAGACTGACGACTAAGGCTTTGATCGAATTGTTTGTGTTTGTGATGATCGTGGGGAGCTTGATAGCTAGCTTAACTGTTGAGGAACTGAGAAGGACCAAGATTTGGACTTTGGGGCTTTGGAGGTGGTGCATGCTTGTAATGGTGACCTTTTGTGGCATGTTGGTTACAAAATGGTTCATGCACATTGTTGTTTTCTTGATTGAAATGAACTTCTTGTTGAAGAAAAAGGTGCTTTATTTTGTCCATGGAATGAAGAAATGTGTCCAGGTTTTTATTTGGATCGGTTTGGTTCTCCTCACATGGGTGCTTTTTATCAATCATGAGGTCCAGCGATCTAAATTGGCCGAAAAGATTTTGGACGGAGTAACATGGACTCTTGTTTCCCTTCTAATTGGAGCATTTTTATGGGTTATAAAGACATTGTTGCTGAAAATTTTGGCATCAAATTTCCATGTGAAATCTTTCTTTGATCGAATTCAAGAATCGATCTTCCATCAATATGTTCTGCAAACTCTCTCCGGGCCTCCACTTATCGATGAGGCTGAGAAAGTCGGGGGATCACAGAGTTTGAGTCATTTTAGTTTCAGGAGTATAACCAATAAAGGTGGCTCGAAGAAAGAAGTTATTGATATGGCAAAGCTTCACAAGATGAAGCAAGAGAAAGTTTCCTCGTGGACCATGAAGATTTTGGTAGATTCAGTGATGAATTCGAGATTGTCCACAATCTCTAATTCACTGGATGAAAGTTTTTATGACGTAGAAAATGAACAAACTGATAAAGAAATTACTAATGAGATGGAAGCAACTGCTGCAGCCTATCATGTTTTCAGAAACGTCGCGGCTTCCCCTAGTTGCACGGACATTGACGAAGATGAACTCCGTAGATTCATGATTAAGGAAGAAGTTCCTTTGGTATTTCCCCTACTTGCACAGGCAGAGACAGGACTAATTACCAGAAAATCTTTAACAGATTGGGTGTTGAAGGTATATCAAGAACGAAGAGCACTCGCGCACGCCTTAAGCGACACTAAAACAGCTGTCAAACAATTAAACAAGCTTGTGACAGTAGTTGTAGTGCTTGTGACCATACTAGTATGGCTTCTTCTTATGGAAATTGCAACAACAAAAGTACTTGTATTCCTTTCATCCCAGCTAGTACTCGCGGCTTTCATGTTTGGAAACACCTGCAAGAATATATTTGAAGCTATCATATTTGTGTTTGTAATGCATCCATTCGACGTTGGTGATCGATGTGTTATAGATGGTGTCGAGCTATTGGTTGAAGAAATGAATATATTGACAACGGTATTCTTGAAACTTAATAATGAGAAGGTGTATTATCCGAATTCTGTCCTCGCCATTAAACCGATTAGCAATTATTACAGAAGCCCGAATATGTCTGAAGGTGTAGAGTTTTCGGTTGATTTTACGACACCAACAGAGAAAATTGGAGCACTGAAAGAAAAAGTAAAGAGGTATTTGGAGAGGAATCCACAATACTGGCATCCATATTTTAGCTTGGTTGTGAAGGAGATTGAAAATGTGAATAAGATTAAGATGGGACTTTATGTTACTCACACAATAAACTTTCAAGAGTTTGGAGAGAAAACCAAGAGGAAAGGTGAACTTGTGATGGAAGTAAAGAAAATATTTGAAGAGCTCAAAATCAGATACAACCTTCTTCCACAAGGTGTTCATCTCAGACACATGGAACCTGATACAAGTTAA 2301 0.3885 MDGNNKNQGGEVSMMEKKREVVVTISNMGGESHAQDHDNGLKVFESLTENELASKSPPIKCASPEIRFSPSPNKPPKAPTTNANLTKRKSFVRSVYSKPKSRFGEQPYSIEGTYLEENVLQEELSVSSPYRNLFNKASCSPNNKSGLINRSVSIASVVTPRTPLMASPGPAGEDPDEIIYKKVELSKGKHKRLTTKALIELFVFVMIVGSLIASLTVEELRRTKIWTLGLWRWCMLVMVTFCGMLVTKWFMHIVVFLIEMNFLLKKKVLYFVHGMKKCVQVFIWIGLVLLTWVLFINHEVQRSKLAEKILDGVTWTLVSLLIGAFLWVIKTLLLKILASNFHVKSFFDRIQESIFHQYVLQTLSGPPLIDEAEKVGGSQSLSHFSFRSITNKGGSKKEVIDMAKLHKMKQEKVSSWTMKILVDSVMNSRLSTISNSLDESFYDVENEQTDKEITNEMEATAAAYHVFRNVAASPSCTDIDEDELRRFMIKEEVPLVFPLLAQAETGLITRKSLTDWVLKVYQERRALAHALSDTKTAVKQLNKLVTVVVVLVTILVWLLLMEIATTKVLVFLSSQLVLAAFMFGNTCKNIFEAIIFVFVMHPFDVGDRCVIDGVELLVEEMNILTTVFLKLNNEKVYYPNSVLAIKPISNYYRSPNMSEGVEFSVDFTTPTEKIGALKEKVKRYLERNPQYWHPYFSLVVKEIENVNKIKMGLYVTHTINFQEFGEKTKRKGELVMEVKKIFEELKIRYNLLPQGVHLRHMEPDTS 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03811 766 FunFam Predicted mechanosensitive ion channel 602 651 - -
Vifa2g03811 766 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 13 763 IPR016688 -
Vifa2g03811 766 Pfam Mechanosensitive ion channel 542 748 IPR006685 GO:0016020|GO:0055085
Vifa2g03811 766 MobiDBLite consensus disorder prediction 52 83 - -
Vifa2g03811 766 PIRSF Memb_At2g17000 2 766 IPR016688 -
Vifa2g03811 766 Gene3D - 602 651 IPR023408 -
Vifa2g03811 766 SUPERFAMILY Sm-like ribonucleoproteins 592 651 IPR010920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03811 Vifa-Chr2 1116507132 1116509670 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03811 57 758 Mechanosensitive Ion Channel Family AT5G12080 59.915 0.0 845
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03811 K22048 - gmx:100777617 1134.78