Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03810 ATGAACATGAGAAACAGTCCTCAAACTCAGAAGACTCTGTCTAGGCAGTCATCGAAGTCGAATTCGAGGAGGAAGCAAGAGCCGCTTAGCCCGTTTTCTGGTGGTGGATGTTGTCGAGGGTTCACCAGCGTCAAGACTGTGGCATCCACTACATCCACGTTGCAACAAAATCAGCTCCAACAGCGTTATGACAGTTTGGAACTCAAGGTAGCAGATATGGAAAAGGAAGTGCAAAAGCAAACAGAACTGAGAGTAATGTATAGAAAAAGAATGGAAAGAACACAAGATTATTTAAGGTACTGCCTCCAAATAGCACAAGAAAATGGAATCTTAGAACAGATTATTCACACCAAAGGTGAACTCCAACAATCACCTTACAATGTCACCTCCATTATCAATAGTCCTCAAATTCCCACTCCAATCCACCAGCACCACCCCAATCTAGAGGCCATCATCGATCAAGCCAAAATTAACGGATGGTACATTAACTCATCAGAGATTCAGTTAGAAGATAAAATAGGACAAGGAACCACAGCTGACATCTACCGAGCAACATGGCGTGGATTTGATGTAGCAGTGAAATGCATTTCACCTGAATTCTTTCGCACAAATGCAAACGGTGTTGAATTCTTTGCTCAAGAAGTTGAAACTCTCTCAAAGCAACGTCACAGGTTTGTGCTTAATCTAATGGGTGCATGTCTTGACCCTCCTAATCATGCATGGGTTGTTACAGAGTTTCTAAGCACCACACTCAAGGAATGGCTTTATGGTCCTGGAAAAAGACGTAGAGATAGAATTGTGCCACTTCCTCCTTTGAAAGAAAGAGTACAACGGGCTTTTGAGATAGCCCGAGCTATGCAATATCTTCATGATCAAAAGCCCAAGATTATTCACCGTGATTTGAAGCCCAGCAACATTTTCTTGGACTTTAATTTGCATGTTAGAGTTGCTGATTTTGGACATGCTCGTTTCTTAGGGGATGGTGAAATGGCTCTCACCGGAGAAACAGGAACATATGTCTATATGTCACCAGAAGTGATACGATGTGAGCCATATAATGAAAAATGTGATGTATATAGTTTTGGAGTGATAATGAATGAGCTTTTAACAGGAAAACATCCTTACATTGAGACAGAATATGGTCCTGCCAAGATTGCTATGGAAGTTGTAGAGGGCAAGTTGCGACCTATGCTTCCTTCAAAGGATGATGGTGAGCAGTTGGGAGAATTGATTGACGTTATACGTCTTTGTTGGGATGGAAATCCTTCCACTAGACCATCCTTTGATACAATTAGTCGTATTCTTAAAAGCTATTATCATAGGGTCCTTCAATTTTCAAAATAG 1344 0.4129 MNMRNSPQTQKTLSRQSSKSNSRRKQEPLSPFSGGGCCRGFTSVKTVASTTSTLQQNQLQQRYDSLELKVADMEKEVQKQTELRVMYRKRMERTQDYLRYCLQIAQENGILEQIIHTKGELQQSPYNVTSIINSPQIPTPIHQHHPNLEAIIDQAKINGWYINSSEIQLEDKIGQGTTADIYRATWRGFDVAVKCISPEFFRTNANGVEFFAQEVETLSKQRHRFVLNLMGACLDPPNHAWVVTEFLSTTLKEWLYGPGKRRRDRIVPLPPLKERVQRAFEIARAMQYLHDQKPKIIHRDLKPSNIFLDFNLHVRVADFGHARFLGDGEMALTGETGTYVYMSPEVIRCEPYNEKCDVYSFGVIMNELLTGKHPYIETEYGPAKIAMEVVEGKLRPMLPSKDDGEQLGELIDVIRLCWDGNPSTRPSFDTISRILKSYYHRVLQFSK 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03810 447 Gene3D Transferase(Phosphotransferase) domain 1 269 445 - -
Vifa2g03810 447 Gene3D Phosphorylase Kinase; domain 1 149 248 - -
Vifa2g03810 447 MobiDBLite consensus disorder prediction 1 28 - -
Vifa2g03810 447 SUPERFAMILY Protein kinase-like (PK-like) 144 433 IPR011009 -
Vifa2g03810 447 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 52 436 - -
Vifa2g03810 447 CDD STKc_MAP3K-like 173 435 - -
Vifa2g03810 447 ProSitePatterns Protein kinases ATP-binding region signature. 173 194 IPR017441 GO:0005524
Vifa2g03810 447 MobiDBLite consensus disorder prediction 1 34 - -
Vifa2g03810 447 Pfam Protein kinase domain 169 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03810 447 SMART serkin_6 167 439 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03810 447 ProSitePatterns Serine/Threonine protein kinases active-site signature. 296 308 IPR008271 GO:0004672|GO:0006468
Vifa2g03810 447 Coils Coil 56 83 - -
Vifa2g03810 447 ProSiteProfiles Protein kinase domain profile. 167 443 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03810 Vifa-Chr2 1115534686 1115539338 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03810 160 442 MAP Kinase Kinase Kinase AT4G35780 34.507 1.99e-47 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-8 Vifa2g03810 Pkinase 3.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03810 - - gmx:100810435 679.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03810 2 1115534686 1115539338 Vifa2g03810 2 1115534686 1115539338 ECH