Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03802 ATGAGTTTAACAACAGTAGAAGACGATTCATCTTCCGAGATTCATTTACCAGCGGAAATTGATTGGCACATGCTAGACAAATCGAAGTTCTTCTTCCTCGGCGCCGCCTTATTCTCCGGCGTCTCCGCCGCACTTTATCCAATGGTGGTTTTGAAGACTCGCCAACAGGTTTCTTCTTCACACTACTCTTGTATCAACATGTCGTGTGCTATTATGCGCTATGAAGGTTTTAGAGGCTTTTATAAAGGCTTTGGTACTTCTTTAATGGGGACTATCCCTGCTAGAGCGCTATACATGACAGCACTTGAGGTTACAAAGAGTAACGTTGGTAGTGCTTTTGTTGATTTGGGGTTTTCTGTTAATACTGCTACTGCTGTTGCTAGTGCTGCAGCTGGTGTTACTTCGGCCATGTCTGCGCAGTTGGTTTGGACTCCAATTGATGTTGTTAGTCAGAGACTCATGGTACAAGGTGGTGGTTGTGGTGGTGGGAATGGTGGTGCAAAGAGTATTTTGGCGAATCTTAATTCGGAGAATTATAGAAATGGTTTAGATGTGTTTAGGAAGATTTTTTATAATGATGGGCCAAGAGGATTCTATAGAGGATTTGGGATTTCAATATTGACATATGCGCCATCGAATGCGGTTTGGTGGACTTCTTATTCAATGGTTCATAGGTTCATTTGGGGTAATTTTGGGCCATGTTTGTGTAAGAGTGGTGGTAATTTGGGTGGTGGTAATTTGGGTGGTGGTGATCGATGTGTTGGTTATAGGCCGGATTCTAAGGTTATGATTGGTGTACAAGGTTTGAGCGCGGTTGTGGCCAGTGGTGTTTCGGCTATTGTGACAATGCCGTTTGATACTATTAAGACTAGGTTGCAGGTTTTGGATACGGAGGAGAATGGGAGAAGGAGGCCTTTAACTTTTGCGCAGACGGTTAGGAATTTGGTCAATGAAGGTGGTTTGTTTGCTTGTTACAAAGGTTTGGGACCGAGGTGGGTGTCCATGTCTATGTCTGCTACGACTATGATTACTACTTACGAATTTTTGAAACGCATGTCTACAAAGAGGCAAGATTAG 1077 0.4336 MSLTTVEDDSSSEIHLPAEIDWHMLDKSKFFFLGAALFSGVSAALYPMVVLKTRQQVSSSHYSCINMSCAIMRYEGFRGFYKGFGTSLMGTIPARALYMTALEVTKSNVGSAFVDLGFSVNTATAVASAAAGVTSAMSAQLVWTPIDVVSQRLMVQGGGCGGGNGGAKSILANLNSENYRNGLDVFRKIFYNDGPRGFYRGFGISILTYAPSNAVWWTSYSMVHRFIWGNFGPCLCKSGGNLGGGNLGGGDRCVGYRPDSKVMIGVQGLSAVVASGVSAIVTMPFDTIKTRLQVLDTEENGRRRPLTFAQTVRNLVNEGGLFACYKGLGPRWVSMSMSATTMITTYEFLKRMSTKRQD 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03802 358 Gene3D Mitochondrial carrier domain 28 358 IPR023395 -
Vifa2g03802 358 ProSiteProfiles Solute carrier (Solcar) repeat profile. 123 226 IPR018108 -
Vifa2g03802 358 SUPERFAMILY Mitochondrial carrier 23 349 IPR023395 -
Vifa2g03802 358 ProSiteProfiles Solute carrier (Solcar) repeat profile. 26 108 IPR018108 -
Vifa2g03802 358 ProSiteProfiles Solute carrier (Solcar) repeat profile. 262 352 IPR018108 -
Vifa2g03802 358 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 10 357 - -
Vifa2g03802 358 Pfam Mitochondrial carrier protein 124 229 IPR018108 -
Vifa2g03802 358 Pfam Mitochondrial carrier protein 39 108 IPR018108 -
Vifa2g03802 358 Pfam Mitochondrial carrier protein 267 355 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03802 Vifa-Chr2 1113563736 1113564812 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03802 13 358 Chloroplast and Mitochondria Gene Families AT5G26200 63.295 1.94e-156 441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03802 K15121 - gmx:100784202 526.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03802 2 1113563736 1113564812 Vifa2g03802 2 1113563736 1113564812 ECH