Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03790 ATGGAAGAAATGTCGGTTGCGGTGACGTTAAGAGCAAGTAATTCAGTTTGTGATAATTCAACTATAGCTACTCATATGGATGTTTCGAGACTTAAGTTGATGGCAAATGCAGAGTTGATATCGAATGCTATAACTACAATATCGGCTGATAGTTTTATAGGTTCTGAGGAGGATCATATTGGCGACAATCTGGACGATGAGGTTGGTGTTTTGGCAGTCGCACCACCTTTGCATGGGAGAGAAGGGGAAATTCTTTTGTTGAATATGATATCTCAAGGTAGCGATGACCTTTTAGTCCCAGAAGTTGATGAGGATGATTCGTTATCATTAGACGGAGATCCGATTATTTACAGCACTCTATCAATAGCCAGTGAGAATAGTAGTGTTTGTGGAGATGAGTTCTTCAGCTCAGAAGATAACTCAGATTTTAGGACAAGGAGTTCAATGGACTCGATGGACATAGATAATAAGAACATCTCTTCTGTCGAAGTTGTTGCTCGGGCTGCTGTTTTTGACGATTCAAATGTGGAGGCAGATATTATAAGTGAACCCGTTGCTGTAGCATCGAGCTTTGGAGACGAAACAGGAGTTAGATCCGTCCCAATGCCTACTACAGCTGTTCTTTATCAACTACCTCTTGAAAAGGGGGTGAGTGGAACAGTTGGTCGAAGTGTTTTTGAATTGGATTGTACCCCACTTTGGGGATTTACATCTTTGTGTGGAAAAAGACCTGAGATGGAAGATGCCGTTGCGGTTGTACCTCGGATGTTGAAAATTCCTATTCAAATGCTAAATGGTAACAAGAAATATGATGGAATTAACAAGGATTTTAATCAGCAGACAGTCCATTTCTTTGGAGTATATGATGGCCACGGTGGCTCTCAGGTGGCAAATTATTGTCGTGATCGTATGCATTTGGCTTTAGCTGAGGAAGTAGAATTGTTCAAGGAAGGTCTAATAATTGGAAGTACCAAGATCGATTGTCAAGATTTATGGAAAAAAGCTTTCACTAAATGTTTTTTGAAGGTTGATAATGAAGTTGGGGGGAAAGTTAATTGTGAACCTGTTGCACCGGAAACTGTTGGTTCCACTGCTGTTGTAGCTATTGTTTGTTCATCCCATATTATAGTTTCAAACTGTGGTGATTCCAGAGCGGTTTTGTGCCGTGGTAAAGAACCAATGCCTTTATCTGTGGATCATAAACCAAATCGAGATGATGAATATGCAAGAATCGAGGCAGCTGGTGGCAAAGTGATACAATGGAATGGTCATCGAGTATTTGGGGTTCTTGCAATGTCAAGGTCTATTGGTGATAGATATTTGAAGCCATGGATTATTCCTGAACCAGAAGTTACATTCCTCCCACGTGCAAAAGACGATGAATGTCTCATTCTGGCCAGTGATGGGTTGTGGGATGTCATGACGAATGAAGAGGCATGTGACTTAGCTCGTAGACGCATACTTCTCTGGCATAAGAAAAATGGCTCAGAGCTGTCCTCAGTAAGGGGAGAGGGAATCGATCCTGCTGCACAGGCAGCTGCAGAATACCTGTCAAACCGTGCTTCGCAAAAAGGAAGCAAAGATAACATCACTGTCATTGTGGTAGATTTGAAAGCTCAACGAAAATTTAAGAGTAAAACATGA 1644 0.4142 MEEMSVAVTLRASNSVCDNSTIATHMDVSRLKLMANAELISNAITTISADSFIGSEEDHIGDNLDDEVGVLAVAPPLHGREGEILLLNMISQGSDDLLVPEVDEDDSLSLDGDPIIYSTLSIASENSSVCGDEFFSSEDNSDFRTRSSMDSMDIDNKNISSVEVVARAAVFDDSNVEADIISEPVAVASSFGDETGVRSVPMPTTAVLYQLPLEKGVSGTVGRSVFELDCTPLWGFTSLCGKRPEMEDAVAVVPRMLKIPIQMLNGNKKYDGINKDFNQQTVHFFGVYDGHGGSQVANYCRDRMHLALAEEVELFKEGLIIGSTKIDCQDLWKKAFTKCFLKVDNEVGGKVNCEPVAPETVGSTAVVAIVCSSHIIVSNCGDSRAVLCRGKEPMPLSVDHKPNRDDEYARIEAAGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPEPEVTFLPRAKDDECLILASDGLWDVMTNEEACDLARRRILLWHKKNGSELSSVRGEGIDPAAQAAAEYLSNRASQKGSKDNITVIVVDLKAQRKFKSKT 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03790 547 PANTHER PROTEIN PHOSPHATASE 163 537 IPR015655 GO:0004722|GO:0006470
Vifa2g03790 547 Pfam Protein phosphatase 2C 259 530 IPR001932 -
Vifa2g03790 547 CDD PP2Cc 235 537 IPR001932 -
Vifa2g03790 547 SUPERFAMILY PP2C-like 229 538 IPR036457 -
Vifa2g03790 547 FunFam Protein phosphatase 2C 16 221 547 - -
Vifa2g03790 547 Gene3D - 220 547 IPR036457 -
Vifa2g03790 547 ProSiteProfiles PPM-type phosphatase domain profile. 233 537 IPR001932 -
Vifa2g03790 547 ProSitePatterns PPM-type phosphatase domain signature. 284 292 IPR000222 GO:0043169
Vifa2g03790 547 SMART PP2C_4 223 535 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03790 Vifa-Chr2 1111381542 1111383682 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03790 1 547 PP2C-type Phosphatase Gene Family AT1G17550 49.378 9.70e-166 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03790 K14497 - gmx:100803321 801.201