Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03788 ATGGAGGATCTGGAGGAGGGAGAGAATGGAGAAGAAGAGGTGCTTGGTTCGAGCTTGACTATGGAGAAAGTAGCAGCTGCTAAGAAGTTCATTGAGAATCATTATAGGGCACAGATGAAGAATATTCAAGATCGGAAAGAGAGGCGTTGTATTTTGGAAAAAAAATTAGCTTCTTCAGACGTGCCAACTGAAGAACGTCTCAACCTCATCAAAGATTTAGAGAGAAAGGAAACTGAATATATGCGATTGAAAAGGCACAAAATTTGTGTTAATGATTTTGATCTCTTGACCATCATTGGAAGAGGGGCTTTTGGGGAGGTTAGACTGTGTCGTGAGAAGAAATCTGGAAAAATCTATGCCATGAAAAAGCTGAAGAAATCTGAAATGCTTAAGAGAGGCCAGGTGGAACATGTTAGAGCAGAGAGGAACTTATTGGCCGAAGTTGCCAATCATTTCATTGTGAAACTTTACTACTCATTTCAGGATACTGAATACTTGTATTTAATTATGGAGTATCTACCCGGGGGTGACATTATGACTCTGCTGATGAGGGAAGACACCTTAAGTGAAAATGTGGCTAGATTTTACATGGCACAAAGTGTTCTTGCCATAGAGTCTATTCATAAACACAATTATATTCACAGAGATATTAAACCCGATAACTTACTTCTGGATAAAAATGGTCACATGAAGCTCTCTGATTTTGGCCTCTGTAAGCCTATCGATTGCATTACCTTGCCTACACTGCATGAAAATCAAACCATGGATGATGAAACTTTGGCTGAGCCAATGGATATCGATAGCTGTGATGCGAACAATCGGAAAAGCTGGAGAAGCCCGCGTGAGCAGCTTCAGCACTGGCAGATGAACCGGAGGAAGTTGGCATTTTCAACCGTGGGGACGCCAGATTACATTGCTCCTGAAGTACTTTTGAAAAAAGGATATGGGATGGAATGTGATTGGTGGTCACTAGGAGCGATAATGTACGAAATGCTGGTTGGTTACCCTCCATTTTACTCTGATGACCCAATAACCACATGCAGAAAGATTGTTCATTGGAGAACCCATTTAAGATTTCCAGAAGATCCTCAATTGACACTTGAGGCTAAGGATCTAATCTACAGATTGATGTGTGATGTTGATCATAGGTTAGGTACTCGAGGGGCACAAGAAATCAAGGCTCATCCATGGTTCAAGGGTGTAGATTGGGATAAACTATATGAAATGGATGCAGCATTTAAACCACAAGTTAACGGGGAACTGGATACCCAAAACTTCATGAAGTTTGATGAGGTAGAACCACCAGATGCAGCAAGAGCTGGCTCTGGATCTTCAAGAAAGATGCTTCTAACTCCCAAAGATCTAAACTTTGTTGGTTATACTTACAAAAACTTCGATGCTGTAAAAGAAGGCCTTCGCCAGTCATTGAGTGAGTCCATGCAAGATTATGCTTCCAAACGGACAGCTGATGAAACAGGCTTGCAAATGCTGGCGTCGTCTGGAGACCCCATGTTACCATAA 1521 0.4162 MEDLEEGENGEEEVLGSSLTMEKVAAAKKFIENHYRAQMKNIQDRKERRCILEKKLASSDVPTEERLNLIKDLERKETEYMRLKRHKICVNDFDLLTIIGRGAFGEVRLCREKKSGKIYAMKKLKKSEMLKRGQVEHVRAERNLLAEVANHFIVKLYYSFQDTEYLYLIMEYLPGGDIMTLLMREDTLSENVARFYMAQSVLAIESIHKHNYIHRDIKPDNLLLDKNGHMKLSDFGLCKPIDCITLPTLHENQTMDDETLAEPMDIDSCDANNRKSWRSPREQLQHWQMNRRKLAFSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPITTCRKIVHWRTHLRFPEDPQLTLEAKDLIYRLMCDVDHRLGTRGAQEIKAHPWFKGVDWDKLYEMDAAFKPQVNGELDTQNFMKFDEVEPPDAARAGSGSSRKMLLTPKDLNFVGYTYKNFDAVKEGLRQSLSESMQDYASKRTADETGLQMLASSGDPMLP 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03788 506 Pfam Protein kinase C terminal domain 417 462 IPR017892 GO:0004674|GO:0005524|GO:0006468
Vifa2g03788 506 ProSiteProfiles Protein kinase domain profile. 93 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03788 506 FunFam Non-specific serine/threonine protein kinase 297 416 - -
Vifa2g03788 506 FunFam Non-specific serine/threonine protein kinase 54 176 - -
Vifa2g03788 506 FunFam Non-specific serine/threonine protein kinase 417 427 - -
Vifa2g03788 506 Pfam Protein kinase domain 290 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03788 506 Pfam Protein kinase domain 95 241 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03788 506 SMART serkin_6 93 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03788 506 CDD STKc_NDR_like 91 463 - -
Vifa2g03788 506 PANTHER SERINE/THREONINE-PROTEIN KINASE 14 444 - -
Vifa2g03788 506 Gene3D Phosphorylase Kinase; domain 1 91 427 - -
Vifa2g03788 506 CDD MobB_NDR_LATS-like 27 88 - -
Vifa2g03788 506 SUPERFAMILY Protein kinase-like (PK-like) 76 441 IPR011009 -
Vifa2g03788 506 SMART pkinase_C_6 399 464 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vifa2g03788 506 Gene3D Transferase(Phosphotransferase) domain 1 177 416 - -
Vifa2g03788 506 ProSiteProfiles AGC-kinase C-terminal domain profile. 399 472 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vifa2g03788 506 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672|GO:0006468
Vifa2g03788 506 MobiDBLite consensus disorder prediction 487 506 - -
Vifa2g03788 506 FunFam Non-specific serine/threonine protein kinase 177 244 - -
Vifa2g03788 506 ProSitePatterns Protein kinases ATP-binding region signature. 99 122 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03788 Vifa-Chr2 1111162273 1111170288 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03788 1 505 AGC Kinase Gene Family AT4G33080 78.193 0.0 823
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Vifa2g03788 Pkinase 4.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03788 K08790 - gmx:100815717 931.398