Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03786 ATGTCTCTTCCACCACCAACTGGTCCCCCACAACAAAACACAATGGTGGCCGTTGACAGAGACAAGAACAGTGCTTACGCTTTTCGTTGGGCAGTTAATCATCTCGATAATCCTGTCATCATTGCTGTCCATGTTAAACACAAAAATTTATCTAACCAGGGCACTAATGTTTTTCCACCCGACGAAGATGATGTATCGCACATTTTCAGTAATTTACGTGCAATGTGTCAAAGTAAAGCTATCACCATGAAAGAAGCCGTAATCGATGATTATGATGTCGTGAAAGGACTATTAGAATTCGCTAAAAGAAATGTCATACATAGTATTGTTGTTGGTGCATCAACAAAGAATCACATGCCAAGTATAAAAAAATTTAAAGCAAATAATGATATAGCAACAAACATGATCAAATTAGCACCAGATTATTGTTCTGTATACATCATTTCGAAGTTGAAGATTGTGTCGGCTCGGTCCGCGGTACGACCAATGGTAAACCAGATTATTCCGATGAAAATTTTACCTGTTCAAGCATCCTCCCCATATGGTGAATTTGAAGGTGGAATGAGGTCAATACTACCTAGAACTGGTGGCACTTATGAAGGATCATCAGAATCAAGGTCTTTTGACAGTATTAGTACGGTGAAAGGATCGACGCGCGAGAGACCAAGGAGTACAGGAAGTAATATGTCACTGGATTGTATTGATGTACCGAGTAGTCGTGGACGAAATTGGGCATCGATGGATGAAAGAGACATGGCAGCGCTTGGGCCAATTGTTGAATCAAACAGATCTGATATGGATCTAATTGATTCCTACGGGACACCGTCCACTTCTTATACCTCAAGAGAGCTTGAAGCTGAGATGAAAAGATTGAGGCTTGAATTGAAGCAAACTATGGACATGTACAGCTCAGCTTGCAAGCAAGCTATCTCAGCAAAAAATCAGGTAGACCAAATTCGTCGATGGAGAGTAGAAGAGGAAAAAAAGGTTGTGGAAGTTAGGTTATCTCAAGAGGCAGCTCTTGCAATGGCAGAAAGGGAGAAGGCTAGAGCAAAGGCTGCATTAGAAGCAGCTGAGGAAGCCAAGTGGAAGGCTGAACTGGAGGCACATAGAAGAAGGGAGGCAGAGATGAAGGCGATGAAAGAGGCAGAAGAGAGGGATCGAGTATTAACCGCATTGGCTCAACATGATAATCGATATCGAAAATACACAATGGAGGAGATTGAAGTTGCTACCGATAGATTCTCCCCGTCAAAAAAAATAGGTGAAGGTGGATACGGACCGGTGTTTAAAGGTCACCTTGATCACACCGCAGTTGCAATCAAACTTTTAAATCCTGAAGCTTCTCAAGGCAGGAAGCAATTCCAACAAGAGGTTGAGGTACTAAGCTGTATTCGACATCCGAATATGGTTCTACTCCTAGGTGCATGTCCTGAGCATGGTTGTTTGGTGTATGAATACATGGATAACGGTAGCTTAGAAGATAGATTATTTCGAAAAAACAAAAGCAAGCCTCTATCATGGCAAAAAAGGTTCCAAATAGCAGCTGAGATTTCAACTGCACTCCTTTTCCTTCACCAAACAAAGCCGGAGCCAATCGTGCATCGAGACCTTAAACCATCAAACATTCTGTTGGACAGAAATTACGTGAGTAAAATAAGCGATGTAGGCCTCGCAAGATTAGTCCCTCCTTCTGTAGTTGACAATGTCACACAATATTACATGACTTCAGCTGCCGGAACATTTTGCTATATCGATCCTGAGTATCAACAAACAGGAATATTAACAACAAGGTCCGATGTTTACTCGTTGGGGATAATGCTACTGCAGATAATCACGGCAAGGCCTCCCATGGGACTTACTCACCAAGTTAAAAAGGCGATCGAAAAGGGTTGTTTCGAGCAGATTCTTGATCCTGCGGTGACTGATTGGCCAGTTGAAGAGGCTCTATCATTTGCTAAAATAGCATTAGGTTGTGCAGAACTCTGCAAGAAAGATAGGCCAAGTCTTGCAAAAGTTGTATTACCAGAGATTAACAGGTTAAGAGACCTTGGAGATACTGATTATCTAGATTTTACCGATACTAAGAGCAATGGTCATTCGCATCGTCCTCCTACTATGCCTACCTGA 2130 0.4207 MSLPPPTGPPQQNTMVAVDRDKNSAYAFRWAVNHLDNPVIIAVHVKHKNLSNQGTNVFPPDEDDVSHIFSNLRAMCQSKAITMKEAVIDDYDVVKGLLEFAKRNVIHSIVVGASTKNHMPSIKKFKANNDIATNMIKLAPDYCSVYIISKLKIVSARSAVRPMVNQIIPMKILPVQASSPYGEFEGGMRSILPRTGGTYEGSSESRSFDSISTVKGSTRERPRSTGSNMSLDCIDVPSSRGRNWASMDERDMAALGPIVESNRSDMDLIDSYGTPSTSYTSRELEAEMKRLRLELKQTMDMYSSACKQAISAKNQVDQIRRWRVEEEKKVVEVRLSQEAALAMAEREKARAKAALEAAEEAKWKAELEAHRRREAEMKAMKEAEERDRVLTALAQHDNRYRKYTMEEIEVATDRFSPSKKIGEGGYGPVFKGHLDHTAVAIKLLNPEASQGRKQFQQEVEVLSCIRHPNMVLLLGACPEHGCLVYEYMDNGSLEDRLFRKNKSKPLSWQKRFQIAAEISTALLFLHQTKPEPIVHRDLKPSNILLDRNYVSKISDVGLARLVPPSVVDNVTQYYMTSAAGTFCYIDPEYQQTGILTTRSDVYSLGIMLLQIITARPPMGLTHQVKKAIEKGCFEQILDPAVTDWPVEEALSFAKIALGCAELCKKDRPSLAKVVLPEINRLRDLGDTDYLDFTDTKSNGHSHRPPTMPT 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03786 709 Gene3D HUPs 7 123 IPR014729 -
Vifa2g03786 709 Gene3D Transferase(Phosphotransferase) domain 1 488 690 - -
Vifa2g03786 709 ProSitePatterns Serine/Threonine protein kinases active-site signature. 533 545 IPR008271 GO:0004672|GO:0006468
Vifa2g03786 709 MobiDBLite consensus disorder prediction 193 230 - -
Vifa2g03786 709 Coils Coil 341 387 - -
Vifa2g03786 709 Pfam Protein kinase domain 417 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03786 709 Coils Coil 281 301 - -
Vifa2g03786 709 CDD STK_N 16 150 - -
Vifa2g03786 709 CDD STKc_IRAK 421 674 - -
Vifa2g03786 709 SMART serkin_6 415 678 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03786 709 FunFam U-box domain-containing protein 51 488 688 - -
Vifa2g03786 709 SUPERFAMILY Protein kinase-like (PK-like) 399 674 IPR011009 -
Vifa2g03786 709 ProSiteProfiles Protein kinase domain profile. 415 678 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03786 709 Pfam Universal stress protein family 13 118 IPR006016 -
Vifa2g03786 709 Gene3D Phosphorylase Kinase; domain 1 385 487 - -
Vifa2g03786 709 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 387 487 - -
Vifa2g03786 709 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 13 118 - -
Vifa2g03786 709 PANTHER OS02G0152300 PROTEIN 15 687 - -
Vifa2g03786 709 MobiDBLite consensus disorder prediction 196 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03786 Vifa-Chr2 1110772563 1110775370 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03786 83 685 Receptor kinase-like Gene Family AT5G12000 55.735 0.0 670
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vifa2g03786 Pkinase 2.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03786 - - psat:127087910 1145.57