Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03779 ATGGGTGCTTCTGGAAAATGGGTGAAAGCATTAATCGGACTCAAAAAACACGACAAAGATGAACAACATGCGAAGGAGGGTGTGAAGAGCAAGAAATGGAGGTTATGGAGAACTTCTTCCGGTGATAACGGTTCTTGGAAAGGCTTTAAAGGTAGCAACCCTCACAAGGCAGTTTCTGAAGGCTCTGAATCTCCAACTGCAGCAGAAGCTTACACCGCTGCTGTAGCCACCGTTGTTAGAGCTCAACCTAAGGATTTTAGACTGGTCAGGCAAGAATGGGCTGCTATAAGAATCCAAACCACTTTCCGCGCCTTCTTGGCAAGAAGGGCTTTGAGGGCTTTGAAGGCGGTGGTGAGGATTCAAGCACTAGTTAGAGGTAGGCAAGTGAGGAAGCAAGCTGCTGTGACATTGAGGTGCATGCAGGCGTTGGTTCGTGTTCAGGCTCGAGTGAGAGCTCGGCGAGTGAGGATGTCTATGGAGGGACAAGCTGTGCAGAATATGCTCAATGAGCGAAGGACAAAGCTTGAACTTTTGAAGGATGCTGAGGAAGGGTGGTGTGATAGTATTGGAACATTGGAAGATGTGAAATCCAAGATTCAAATGAGGCAAGAAGGGGCTTTCAAAAGAGAGAGAGCACTTGCGTACTCTCTTGCTCAGAAGCAATGCAGGCCAACTTCAAGCACTAATTCACAAACCGCCGCCTCGTTTTCCTCTCTCAAGAATCCCGAGATGAACAAAGCTAACGGGGGATGGAGTTGGTTGGAAAGATGGATGGCAGCCAAGCCTTGGGAGACAAGATTGATGGAACAATCCCATGCTGAAAGCTTAGATAAAACACCTCCACCACCTCCAAAGAAATTCGTGGAACCCTTTGTAAGCTCTAATTCGAAACAATGCTCGGTCAATGTCAAGAAGAACAATGTTACAACAAGGATTTCTGCAAAGCCTCCTCCCCACATCGGACAAGCTACTCGTTCTTCCTCAAGTCCAAGTTCTGAGTTTCGGTATGATGAGAGTTCTGCATCGTCTTCTATTTGTACATCCGCAACACCAATGTCAGGGAACACTTATGAAAGGACTGAGGATAGTAGCAACAACAATAGGCCAAATTACATGAACCTAACGCAATCAACCAAGGCAAAGCTAAAATCGGGTAACAATCCAATATATAACCGAGCTCAAAGGCAGCAATCAATGGACGAGTTTCAGTTTATGAGGAGGGCTGCAGGTTTCTCTAATGGAGATTCTAGAAGTATAGCTGCTTCTGACCATTCACTCAACTTCTCTAGGCCACTTCACCTACCAACTCACATGGATAAAAGCTCTGTAAGACCACGGTGA 1341 0.4623 MGASGKWVKALIGLKKHDKDEQHAKEGVKSKKWRLWRTSSGDNGSWKGFKGSNPHKAVSEGSESPTAAEAYTAAVATVVRAQPKDFRLVRQEWAAIRIQTTFRAFLARRALRALKAVVRIQALVRGRQVRKQAAVTLRCMQALVRVQARVRARRVRMSMEGQAVQNMLNERRTKLELLKDAEEGWCDSIGTLEDVKSKIQMRQEGAFKRERALAYSLAQKQCRPTSSTNSQTAASFSSLKNPEMNKANGGWSWLERWMAAKPWETRLMEQSHAESLDKTPPPPPKKFVEPFVSSNSKQCSVNVKKNNVTTRISAKPPPHIGQATRSSSSPSSEFRYDESSASSSICTSATPMSGNTYERTEDSSNNNRPNYMNLTQSTKAKLKSGNNPIYNRAQRQQSMDEFQFMRRAAGFSNGDSRSIAASDHSLNFSRPLHLPTHMDKSSVRPR 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03779 446 Pfam IQ calmodulin-binding motif 115 132 IPR000048 GO:0005515
Vifa2g03779 446 Pfam IQ calmodulin-binding motif 93 112 IPR000048 GO:0005515
Vifa2g03779 446 MobiDBLite consensus disorder prediction 269 292 - -
Vifa2g03779 446 ProSiteProfiles IQ motif profile. 115 142 IPR000048 GO:0005515
Vifa2g03779 446 MobiDBLite consensus disorder prediction 306 372 - -
Vifa2g03779 446 ProSiteProfiles IQ motif profile. 91 119 IPR000048 GO:0005515
Vifa2g03779 446 SMART iq_5 113 134 IPR000048 GO:0005515
Vifa2g03779 446 SMART iq_5 90 112 IPR000048 GO:0005515
Vifa2g03779 446 MobiDBLite consensus disorder prediction 320 372 - -
Vifa2g03779 446 Gene3D - 89 140 - -
Vifa2g03779 446 PANTHER IQ-DOMAIN 5-RELATED 1 412 - -
Vifa2g03779 446 MobiDBLite consensus disorder prediction 44 63 - -
Vifa2g03779 446 MobiDBLite consensus disorder prediction 426 446 - -
Vifa2g03779 446 Pfam Protein of unknown function (DUF4005) 338 416 IPR025064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03779 Vifa-Chr2 1107208540 1107210386 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03779 1 440 IQD Protein Family AT2G26180 59.819 4.26e-150 431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03779 - - gmx:100799714 614.379