Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03778 ATGGGTGCTTCTGGAAAATGGGTGAAAGCATTAATCGGACTCAAAAAACACGACAAAGATGAACAACATGCGAAGGAGGGTGTGAAGAGCAAGAAATGGAGGTTATGGAGAACTTCTTCCGGTGATAACGGTTCTTGGAAAGGCTTTAAAGGTAGCAACCCTCACAAGGCAGTTTCTGAAGGCTCTGAATCTCCAACTGCAGCAGAAGCTTACACCGCTGCTGTAGCCACCGTTGTTAGAGCTCAACCTAAGGATTTTAGACTGGTCAGGCAAGAATGGGCTGCTATAAGAATCCAAACCACTTTCCGCGCCTTCTTGGCAAGAAGGGCTTTGAGGGCTTTGAAGGCGGTGGTGAGGATTCAAGCACTAGTTAGAGGTAGGCAAGTGAGGAAGCAAGCTGCTGTGACATTGAGGTGCATGCAGGCGTTGGTTCGTGTTCAGGCTCGAGTGAGAGCTCGGCGAGTGAGGATGTCTATGGAGGGACAAGCTGTGCAGAATATGCTCAATGAGCGAAGGACAAAGCTTGAACTTTTGAAGGATGCTGAGGAAGGGTGGTGTGATAGTATTGGAACATTGGAAGATGTGAAATCCAAGATTCAAATGAGGCAAGAAGGGGCTTTCAAAAGAGAGAGAGCACTTGCGTACTCTCTTGCTCAGAAGCAGCAATGCAGGCCAACTTCAAGCACTAATTCACAAACCGCCGCCTCGTTTTCCTCTCTCAAGAATCCCGAGATGAACAAAGCTAACGGGGGATGGAGTTGGTTGGAAAGATGGATGGCAGCCAAGCCTTGGGAGACAAGATTGATGGAACAATCCCATGCTGAAAGCTTAGATAAAACACCTCCACCACCTCCAAAGAAATTCGTGGAACCCTTTGTAAGCTCTAATTCGAAACAATGCTCGGTCAATGTCAAGAAGAACAATGTTACAACAAGGATTTCTGCAAAGCCTCCTCCCCACATCGGACAAGCTACTCGTTCTTCCTCAAGTCCAAGTTCTGAGTTTCGGTATGATGAGAGTTCTGCATCGTCTTCTATTTGTACATCCGCAACACCAATGTCAGGGAACACTTATGAAAGGACTGAGGATAGTAGCAACAACAATAGGCCAAATTACATGAACCTAACGCAATCAACCAAGGCAAAGCTAAAATCGGGTAACAATCCAATATATAACCGAGCTCAAAGGCAGCAATCAATGGACGAGTTTCAGTTTATGAGGAGGGCTGCAGGTTTCTCTAATGGAGATTCTAGAAGTATAGCTGCTTCTGACCATTCACTCAACTTCTCTAGGCCACTTCACCTACCAACTCACATGGATAAAAGCTCTGTAAGACCACGGTGA 1344 0.4628 MGASGKWVKALIGLKKHDKDEQHAKEGVKSKKWRLWRTSSGDNGSWKGFKGSNPHKAVSEGSESPTAAEAYTAAVATVVRAQPKDFRLVRQEWAAIRIQTTFRAFLARRALRALKAVVRIQALVRGRQVRKQAAVTLRCMQALVRVQARVRARRVRMSMEGQAVQNMLNERRTKLELLKDAEEGWCDSIGTLEDVKSKIQMRQEGAFKRERALAYSLAQKQQCRPTSSTNSQTAASFSSLKNPEMNKANGGWSWLERWMAAKPWETRLMEQSHAESLDKTPPPPPKKFVEPFVSSNSKQCSVNVKKNNVTTRISAKPPPHIGQATRSSSSPSSEFRYDESSASSSICTSATPMSGNTYERTEDSSNNNRPNYMNLTQSTKAKLKSGNNPIYNRAQRQQSMDEFQFMRRAAGFSNGDSRSIAASDHSLNFSRPLHLPTHMDKSSVRPR 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03778 447 MobiDBLite consensus disorder prediction 321 373 - -
Vifa2g03778 447 ProSiteProfiles IQ motif profile. 115 142 IPR000048 GO:0005515
Vifa2g03778 447 MobiDBLite consensus disorder prediction 220 243 - -
Vifa2g03778 447 ProSiteProfiles IQ motif profile. 91 119 IPR000048 GO:0005515
Vifa2g03778 447 Pfam Protein of unknown function (DUF4005) 339 417 IPR025064 -
Vifa2g03778 447 Pfam IQ calmodulin-binding motif 115 132 IPR000048 GO:0005515
Vifa2g03778 447 Pfam IQ calmodulin-binding motif 93 112 IPR000048 GO:0005515
Vifa2g03778 447 PANTHER IQ-DOMAIN 5-RELATED 1 413 - -
Vifa2g03778 447 MobiDBLite consensus disorder prediction 305 373 - -
Vifa2g03778 447 MobiDBLite consensus disorder prediction 427 447 - -
Vifa2g03778 447 Gene3D - 88 142 - -
Vifa2g03778 447 SMART iq_5 113 134 IPR000048 GO:0005515
Vifa2g03778 447 SMART iq_5 90 112 IPR000048 GO:0005515
Vifa2g03778 447 MobiDBLite consensus disorder prediction 270 293 - -
Vifa2g03778 447 MobiDBLite consensus disorder prediction 44 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03778 Vifa-Chr2 1107208540 1107210386 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03778 1 441 IQD Protein Family AT2G26180 59.685 3.42e-148 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03778 - - gmx:100799714 609.757