Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03775 ATGAAGGGAATTTTAGTGAAAGAAGAAGAAACACTAGCATGTATAAATGTTGGTTCTTCAACAAGTTCATCTTCCTCTTCCAATTCAAGTCTTCAACCAAAACCAATGGAAGGGTTACACGAAACAGGTCCACCTCCATTTCTCACCAAAACCTTTGATGTCGTTGAAGATCCTTCCACCGATGGAATCGTTTCGTGGAGCAGAGCTCGTAATAGCTTCGTCGTTTGGGACCTTAATAAATTCTCCACTGCGATTTTACCTCGTTACTTCAAACATAGCAATTTCTCTAGCTTTGTTCGTCAACTCAATACCTATGGTTTTAGAAAAGTTGATCCGGATCGATGGGAATTTGCGAATGAAGGGTTCTTAGCTGGACAGAGGAACTTGTTGAGAACGATCAAGAGAAGAAGAAATGTAGCGCAGTCGCCGTCTATGCAGCGAGAAAGTGGTGGTGCTTGTATTGAATTAGGAGAGTTTGGTCTTGAAGGTGAGATTGAGAGGTTGAGAAGAGACAGATCTGTTTTAGTGGCTGAAATTGTGAAATTGAGGCAGCAGCAGAATAATTCAAGGGATCAATTATCTGCTATGGAAGCTAGGTTGTTGATTACTGAGAAGAAACATCAACAAATGATGGCTTTTCTTGCAAAAGCACTTAGTAATCACTCTTTTATTCAGCAATTGGCAAACAACAAAGAGTTGAAAGGTGTTGAAATGAAGCGAAAGAGGAGGCTCACTGCTAGTTCGAGTTTGGAGAATTTGCAGAATGATTCCGTGACGATGATGGCAGTGCCGATTGAGTCTGTGGTTGATTGTTCTAGTCAAGAACAACAAGAGGGTTTGACTACTATTGAGTCCGAGATAGAGACATTGTTAAGTGCTTATGGTAATGAATCAAGGAGTGAAATCAAAGACTATGCATCATTGAGTTCAGTTCCAAGTGCTAATGAGAGTAATTTGAGTGATTGGGAGGATTTACTGAACCAAGAGTTGGTTGGTGGGAATCCAGAGGATGAAGTTTTGATTGGTGATTTCTCACAAATTGATGCGCCGGTTGAGGATTTGGTAGAAAAGAATGATGATTGGACTGTGGATTTGCAGAACCTTGTTGATCAAATGGATTTTGAACCTTAA 1131 0.4041 MKGILVKEEETLACINVGSSTSSSSSSNSSLQPKPMEGLHETGPPPFLTKTFDVVEDPSTDGIVSWSRARNSFVVWDLNKFSTAILPRYFKHSNFSSFVRQLNTYGFRKVDPDRWEFANEGFLAGQRNLLRTIKRRRNVAQSPSMQRESGGACIELGEFGLEGEIERLRRDRSVLVAEIVKLRQQQNNSRDQLSAMEARLLITEKKHQQMMAFLAKALSNHSFIQQLANNKELKGVEMKRKRRLTASSSLENLQNDSVTMMAVPIESVVDCSSQEQQEGLTTIESEIETLLSAYGNESRSEIKDYASLSSVPSANESNLSDWEDLLNQELVGGNPEDEVLIGDFSQIDAPVEDLVEKNDDWTVDLQNLVDQMDFEP 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03775 376 Gene3D - 39 137 IPR036388 -
Vifa2g03775 376 SMART hsfneu3 43 136 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa2g03775 376 Pfam HSF-type DNA-binding 47 136 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa2g03775 376 Coils Coil 351 371 - -
Vifa2g03775 376 PRINTS Heat shock factor (HSF) domain signature 85 97 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa2g03775 376 PRINTS Heat shock factor (HSF) domain signature 98 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa2g03775 376 PRINTS Heat shock factor (HSF) domain signature 47 70 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa2g03775 376 ProSitePatterns HSF-type DNA-binding domain signature. 86 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa2g03775 376 Coils Coil 165 199 - -
Vifa2g03775 376 MobiDBLite consensus disorder prediction 17 43 - -
Vifa2g03775 376 SUPERFAMILY "Winged helix" DNA-binding domain 43 136 IPR036390 -
Vifa2g03775 376 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 33 273 IPR027725 -
Vifa2g03775 376 MobiDBLite consensus disorder prediction 17 35 - -
Vifa2g03775 376 FunFam Heat shock transcription factor 1 40 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03775 Vifa-Chr2 1105743432 1105744841 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03775 33 374 HSF AT2G26150 51.567 2.26e-117 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vifa2g03775 HSF_DNA-bind 3.6e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03775 K09419 - gmx:100794605 446.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03775 2 1105743432 1105744841 Vifa2g03775 2 1105743432 1105744841 ECH