Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03774 ATGAGTGGCGAGGATGAAGAAAAAAAGTTGAAATTGAAGCGAAATTCTTCTCGGTTAAGCAATTTTCAACGCGACCTTATGGCGGGTGCGTTGATGGGTGGTGCGATTCATACGCTTGTGGCCCCGATTGAGAGGGCGAAATTGTTGTTGCAGACGCAGGAGAGTAACTTGGCTATTGTTGCTAGTGGTCGGAGAAAATTCAAAGGGATGTTTGATTGTATAATTCGGACTGTTAAGGAAGAAGGTGTTGTTTCTTTGTGGCGTGGGAATGGGAGTAGTGTTCTTCGATATTATCCTTCTGTTGCACTCAATTTCTCTCTTAAGGATCTTTACAGAAGCATATTAAGGGGTGGGAACTCTGATGCCGATAATTTTTTCTCTGGTGCATCCGCTAATTTTGTTGCCGGATCTGCAGCAGGTTGTACATCACTTATCTTGGTATACCCCCTTGATATCGCACACACCCGCCTTGCCGCTGACATCGGGAGGACGGAAGTGCGCCAATTCCGAGGCATTTACCATTTCTTGGCCACGATATTCCAAAAAGACGGGGTTCGGGGAATTTACAGGGGCCTTCCTGCATCACTACACGGTATGGTGGTTCATAGAGGTCTTTACTTCGGAGGGTTTGATACCATAAAAGAGAAGTTGTCTGAAGAATCTAAACCTGAGTTGGTGCTGTGGAAACGTTGGATGGTAGCTCAAGCAGTTACAACCTCAGCCGGTCTGATATCATATCCGCTAGACACAGTTCGTAGGAGGATGATGATGCAGTCTGGCATGGAACATCCGGTGTACACTAGCACCCTCGACTGCTGGAGGAAAATCTATCGAACAGAGGGATTGGTTTCGTTTTACCGTGGCACGGTTTCGAATGTGTTTAGGAGCACTGGAGCTGCAGCTATCTTAGTCTTGTATGATGAGGTCAAGAAATTTATGAATTGGGGAGGATTGTGA 957 0.4619 MSGEDEEKKLKLKRNSSRLSNFQRDLMAGALMGGAIHTLVAPIERAKLLLQTQESNLAIVASGRRKFKGMFDCIIRTVKEEGVVSLWRGNGSSVLRYYPSVALNFSLKDLYRSILRGGNSDADNFFSGASANFVAGSAAGCTSLILVYPLDIAHTRLAADIGRTEVRQFRGIYHFLATIFQKDGVRGIYRGLPASLHGMVVHRGLYFGGFDTIKEKLSEESKPELVLWKRWMVAQAVTTSAGLISYPLDTVRRRMMMQSGMEHPVYTSTLDCWRKIYRTEGLVSFYRGTVSNVFRSTGAAAILVLYDEVKKFMNWGGL 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03774 318 Gene3D Mitochondrial carrier domain 18 313 IPR023395 -
Vifa2g03774 318 PRINTS Adenine nucleotide translocator signature 22 34 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vifa2g03774 318 PRINTS Adenine nucleotide translocator signature 67 88 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vifa2g03774 318 PRINTS Adenine nucleotide translocator signature 100 112 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vifa2g03774 318 PRINTS Adenine nucleotide translocator signature 230 246 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vifa2g03774 318 PRINTS Adenine nucleotide translocator signature 127 140 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vifa2g03774 318 ProSiteProfiles Solute carrier (Solcar) repeat profile. 229 312 IPR018108 -
Vifa2g03774 318 ProSiteProfiles Solute carrier (Solcar) repeat profile. 127 216 IPR018108 -
Vifa2g03774 318 Pfam Mitochondrial carrier protein 130 219 IPR018108 -
Vifa2g03774 318 Pfam Mitochondrial carrier protein 227 314 IPR018108 -
Vifa2g03774 318 Pfam Mitochondrial carrier protein 21 116 IPR018108 -
Vifa2g03774 318 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 19 315 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vifa2g03774 318 ProSiteProfiles Solute carrier (Solcar) repeat profile. 20 114 IPR018108 -
Vifa2g03774 318 PRINTS Mitochondrial carrier protein signature 89 109 IPR002067 GO:0055085
Vifa2g03774 318 PRINTS Mitochondrial carrier protein signature 189 207 IPR002067 GO:0055085
Vifa2g03774 318 PRINTS Mitochondrial carrier protein signature 38 52 IPR002067 GO:0055085
Vifa2g03774 318 PRINTS Mitochondrial carrier protein signature 25 38 IPR002067 GO:0055085
Vifa2g03774 318 PRINTS Mitochondrial carrier protein signature 142 160 IPR002067 GO:0055085
Vifa2g03774 318 PRINTS Mitochondrial carrier protein signature 234 256 IPR002067 GO:0055085
Vifa2g03774 318 FunFam probable ADP,ATP carrier protein At5g56450 24 315 - -
Vifa2g03774 318 SUPERFAMILY Mitochondrial carrier 20 308 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03774 Vifa-Chr2 1105628795 1105633964 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03774 22 315 Antiporters AT5G17400 37.086 2.93e-63 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03774 K05863 - gmx:100797251 532.332