Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03762 ATGAGAGTAGCTAGAAAATGCTCATATTGTGGAACTATAGGTCACAATTCAAGGACTTGTAGTTACACTCTAAGTCACAAACAACTTTATCTTTATTCTTCTTGTTCTTCACCTTCATCCCTTAACTCCCGATTTCGTGTAAATGAAAGTTCAGAAAATTACTCTGGAAGTGACCTCATATCTACAATTCCATGCAGTAAAAAAGGTATGTTGTGGACTGAGGATGAACACTATAGGTTTCTTAGAGGGCTTGAGAAACATGGGAAGGGTAACTGGAGAAATATATCTAAAGATTTTGTGACAACAAGAACACCAACCCAAGTGGCAAGTCATGCACAAAAACATTTTATTCGTGTCTATTCGAAAAGCATCATGAATAGAACACAACACAATCTCAGTCTCATTAGTGTGGGAGGTGAAAGTAAAACAAGATTTGAAGCATTTTATGAACCAAGTGAAGCTTTTGGTTCATTATCAGGAATGACTAGTTTGACAGCAAATGATATTAGCTGCATGAGCCAACTAAGTAGCAGAAGAAACTTTCTTTCTCAGTGGCTTTGTCATCCTCAATATTCAGTGCTGAAATGGCCTAACTCTTCAATTTCAACGAATTGTAGTCCTCAAAAAGAAGCACCTGATTTAGAACTCAAACTTGCAACTCCTACGCCATTAGAGCTAACACAGGCATGCTCTGGAAGCCATTTAAGTTAA 711 0.3741 MRVARKCSYCGTIGHNSRTCSYTLSHKQLYLYSSCSSPSSLNSRFRVNESSENYSGSDLISTIPCSKKGMLWTEDEHYRFLRGLEKHGKGNWRNISKDFVTTRTPTQVASHAQKHFIRVYSKSIMNRTQHNLSLISVGGESKTRFEAFYEPSEAFGSLSGMTSLTANDISCMSQLSSRRNFLSQWLCHPQYSVLKWPNSSISTNCSPQKEAPDLELKLATPTPLELTQACSGSHLS 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03762 236 ProSiteProfiles SANT domain profile. 72 120 IPR017884 -
Vifa2g03762 236 SMART sant 68 118 IPR001005 -
Vifa2g03762 236 FunFam transcription factor MYB1R1 70 121 - -
Vifa2g03762 236 ProSiteProfiles Myb-like domain profile. 72 116 IPR001005 -
Vifa2g03762 236 Gene3D - 71 121 - -
Vifa2g03762 236 Pfam Myb-like DNA-binding domain 72 115 IPR001005 -
Vifa2g03762 236 CDD SANT 72 116 IPR001005 -
Vifa2g03762 236 PANTHER TRANSCRIPTION FACTOR KUA1 5 127 - -
Vifa2g03762 236 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 120 IPR017930 -
Vifa2g03762 236 NCBIfam myb-like DNA-binding domain, SHAQKYF class 67 118 IPR006447 GO:0003677
Vifa2g03762 236 SUPERFAMILY Homeodomain-like 65 119 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03762 Vifa-Chr2 1103155294 1103156217 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vifa2g03762 Myb_DNA-binding 1.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03762 - - psat:127084418 289.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03762 2 1103155294 1103156217 Vifa2g03762 2 1103155294 1103156217 ECH