Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03747 ATGATCAAAATTCCAAACCTTAAAATCCCCGAATGGAACACGACACAATACGAGGGAGGATCATTCTCAAACCGTTTCATTTCAAACGACTCACCAGACACACAAATTTCAAACCTTAAAATCCCAGAAGATTTCGACTTACCCGTTCATGTTTTCTCTTCCGACCATTTCCGAATGTTCGAATTCAAAGTGAGGAAATGCCAGCGTGGCAGGTCTCACGACTGGACGGAATGTCCTTACTCTCATCCCGGCGAGAAAGCTCGTCGGAGAGACCCTCGGAAGTTTAACTACTCCGGGACACCTTGCTCGGAGTTTCGCAGATTAGGAAACTGTACAAAAGGCGATTCATGTTACTTCGCGCATGGTGTTTTCGAATGCTGGCTTCATCCTTCTCGTTACAGGACGCAGCTTTGTAACGACGGCACCGCTTGTCGTAGGCGAGTGTGTTTCTTTGCTCACACCATTGATCAACTTCGTCTCTCGGGTAAAGGTTCACCTGAAACGTTTGTTTCTTCTCCTACTTCGGTTCTTGAGTCTCCTCCGGGATACTCCCGATACGGTGACGTTCCGGTGAACGTACGGGAATTAGTTGACTGCATGCGGGACATTAGAATAACGGATTCGGATCGGGCCGGGTGTCTGCGGGGTGGGTTTTTTAGTCTTCCGTCAAGGTATGATGGGGTTAGTATGGAGAGGGTGCAATCTGGAAGAGATCTTAGAGGCAAAATCTATGGGAAACTCAGTGAGTTGAACTTCAATGACAGTGTTGTTTCGGTTCCTGTTCCTGATTTTGGATGGGTATCGGAACTGGTTAACTGA 819 0.4737 MIKIPNLKIPEWNTTQYEGGSFSNRFISNDSPDTQISNLKIPEDFDLPVHVFSSDHFRMFEFKVRKCQRGRSHDWTECPYSHPGEKARRRDPRKFNYSGTPCSEFRRLGNCTKGDSCYFAHGVFECWLHPSRYRTQLCNDGTACRRRVCFFAHTIDQLRLSGKGSPETFVSSPTSVLESPPGYSRYGDVPVNVRELVDCMRDIRITDSDRAGCLRGGFFSLPSRYDGVSMERVQSGRDLRGKIYGKLSELNFNDSVVSVPVPDFGWVSELVN 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03747 272 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 100 122 IPR000571 GO:0046872
Vifa2g03747 272 SUPERFAMILY CCCH zinc finger 96 126 IPR036855 GO:0046872
Vifa2g03747 272 SMART c3hfinal6 96 123 IPR000571 GO:0046872
Vifa2g03747 272 SMART c3hfinal6 132 155 IPR000571 GO:0046872
Vifa2g03747 272 Gene3D - 91 163 - -
Vifa2g03747 272 ProSiteProfiles Zinc finger C3H1-type profile. 96 124 IPR000571 GO:0046872
Vifa2g03747 272 PANTHER UNKEMPT FAMILY MEMBER 46 271 IPR045234 -
Vifa2g03747 272 Pfam RNA-binding, Nab2-type zinc finger 138 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03747 Vifa-Chr2 1098387605 1098388423 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03747 46 176 C2H2 Transcription Factor Family AT5G12850 57.037 1.16e-51 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vifa2g03747 zf-CCCH 9.1e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03747 - K23048 mtr:11430634 431.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03747 2 1098387605 1098388423 Vifa2g03747 2 1098387605 1098388423 ECH