Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03745 ATGAACACCATCTCTCTTTGTCTTGGTCTTGGCCTCCATGAACAAAGACAGAAGAAAAACAAGGAGGATCCATCATGTAGTAGCTCAAAGGCATACCAATATTCTCTTACGTTAGGAATAGCATCCCTTGATAATATTCATGAGAAAAATAATCAAGTAGCTGCTACTACTACTACTACAAAGATTGAATCAGATGTCTCTAATTCTACAAGCATGCATGTGTCTTCATTTTCCAACTCCATTAGTAACATCAAAAGGGAGAGAGATGAACATCAAGTACACCACCTTCTACAGAAGATTCCATTTGTTGATTTCGATGTTGATGAGAATGGTAACTCTAGCAAGAAGAAACTCAGGCTTACCAAAGAACAATCCACAGTTTTGGAACACACCTTCAAAGACCATTCTACCCTCAATCCGAAGAAAAAGCTAGAGTTGGCAAAGAAGCTGAATCTTCGGACAAGACAAGTGGAGGTGTGGTTTCAAAACAGGAGGGCAAGGACAAAGCTGAAACAAACGGAAGTGAACTGTGAAGCACTTAAGAAATGTTATGAAACTCTAACAAAAGAGAACAAGAGGCTTGAAGAGGAGTTAAAAGAGCTCAAAATGATGAAAACAATGGCGGAACCATTTAACTATACGCAGCTTCCGGTGGCCGGTCTTAAGGTTTGCCCTTCTTGTAAGACAATTTGCAACGGTAACAGAAGTGTCAATGGAACCTCTCACACCACGGCACAAATTCAGTTGTATACAAAGACAAATAATTATATGTTCACCCAATCCTCTGCAGCTATTGCTAGCTAG 804 0.398 MNTISLCLGLGLHEQRQKKNKEDPSCSSSKAYQYSLTLGIASLDNIHEKNNQVAATTTTTKIESDVSNSTSMHVSSFSNSISNIKRERDEHQVHHLLQKIPFVDFDVDENGNSSKKKLRLTKEQSTVLEHTFKDHSTLNPKKKLELAKKLNLRTRQVEVWFQNRRARTKLKQTEVNCEALKKCYETLTKENKRLEEELKELKMMKTMAEPFNYTQLPVAGLKVCPSCKTICNGNRSVNGTSHTTAQIQLYTKTNNYMFTQSSAAIAS 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03745 267 ProSitePatterns 'Homeobox' domain signature. 146 169 IPR017970 GO:0000981|GO:0006355
Vifa2g03745 267 Pfam Homeobox associated leucine zipper 171 204 IPR003106 GO:0006355|GO:0043565
Vifa2g03745 267 ProSiteProfiles 'Homeobox' domain profile. 111 171 IPR001356 GO:0003677
Vifa2g03745 267 SMART HOX_1 113 175 IPR001356 GO:0003677
Vifa2g03745 267 Coils Coil 170 207 - -
Vifa2g03745 267 SMART halz 171 214 IPR003106 GO:0006355|GO:0043565
Vifa2g03745 267 Pfam Homeodomain 115 169 IPR001356 GO:0003677
Vifa2g03745 267 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 5 248 - -
Vifa2g03745 267 SUPERFAMILY Homeodomain-like 101 172 IPR009057 -
Vifa2g03745 267 Gene3D - 121 167 - -
Vifa2g03745 267 CDD homeodomain 115 172 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03745 Vifa-Chr2 1096960499 1096961532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03745 84 230 Homeobox Transcription Factor Family AT2G22800 58.000 3.64e-51 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vifa2g03745 Homeodomain 4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03745 K09338 - gmx:100790927 204.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03745 2 1096960499 1096961532 Vifa2g03745 2 1096960499 1096961532 ECH