Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03731 ATGAATTTCAAGATGGATTCTTCCGATAAAGCCAAACTCTTCGTTGGTGGCATTTCTCGAGACACTACCGAAGATATTCTCAAGCACTATTTCGCTAAATACGGCGACGTTTTGTATTCCACCATCTCTTTCGACCGCGCTACGCGAATCCCTCGAGGTTTCGGCTTCGTTACGTTTTCTGATATCGGTTCAGCTGAAAAAGCCCTTCAAGATACCCATGCCATTCTTGGAAGAAAGATAGAGGTGAGAAAAGCTATACCAAGAAGTGAACAGTTACAGCAAAATCAATTACAGAATAGAGGAAGTGGCTATGGTAATTTTGAATGTAACAGTGACCAGATTAGGACTAAGAAGATTTTTGTAGGAGGTTTACCTGCTAATATATCTGTGGAGGAGTTTAAGAGATATTTTGAGGGGTTTGGTACGATAACTGATGTGGTGGTTATGCAGGACAGTGTAACTCATAGGCCGAGGGGGTTTGGGTTTATCACTTTTGAGAATGAGGAATCTGTGCAGAATGTTACCGTGAAAAGTTTTCATGACTTGAATGGGAGGTTGGTGGAGGTTAAGAGGGCTGTTCCGAGGGAGGGGAATGTTGGTAATGATCGCTTTGGTGGGAAAATAAGGTATAAGATTGATAGAGGAGCCACTGAGATGTTTCCTCATTCTAGTCCGGGTAATATGGTTCCTGGATTTTCTCCTTTACCTTGGTACCCTAGTGATGTGGGATATGGGTATGGATCAAATGCCTATGGTTGTTGGTACCCTATGGGTGGCTATGGGGGGAACGGGAATGGATATGTAGCTCCGTCTGATGTTTATCGTAACTTCTGGTATGGGCAAATGGTAACTGGTCATCAGGCGCCGCCTTACGTTAATGCTATGCCGAGTGTTGCATTTATGGGTGGTTCTGTTGGAATGGTAGGTAGTGGTGCTGAAACTTGGGGCTATAATGCTGTTATTGAGTCCGCGACTAACTATAAATTTGGCCAACCGTTAATCGCCAATGGATTTGTTCCATATAATGTGCCATTGCCTTATGGTGTAAAGCAAGGTGTTGGCGCTTCAAGTTTTAAACAAAGCAATGGTGAAATTTCTAGCTGA 1104 0.433 MNFKMDSSDKAKLFVGGISRDTTEDILKHYFAKYGDVLYSTISFDRATRIPRGFGFVTFSDIGSAEKALQDTHAILGRKIEVRKAIPRSEQLQQNQLQNRGSGYGNFECNSDQIRTKKIFVGGLPANISVEEFKRYFEGFGTITDVVVMQDSVTHRPRGFGFITFENEESVQNVTVKSFHDLNGRLVEVKRAVPREGNVGNDRFGGKIRYKIDRGATEMFPHSSPGNMVPGFSPLPWYPSDVGYGYGSNAYGCWYPMGGYGGNGNGYVAPSDVYRNFWYGQMVTGHQAPPYVNAMPSVAFMGGSVGMVGSGAETWGYNAVIESATNYKFGQPLIANGFVPYNVPLPYGVKQGVGASSFKQSNGEISS 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03731 367 SUPERFAMILY RNA-binding domain, RBD 5 107 IPR035979 GO:0003676
Vifa2g03731 367 Gene3D - 115 203 IPR012677 -
Vifa2g03731 367 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 87 IPR000504 GO:0003723
Vifa2g03731 367 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 13 80 IPR000504 GO:0003723
Vifa2g03731 367 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 174 IPR000504 GO:0003723
Vifa2g03731 367 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 5 323 - -
Vifa2g03731 367 SUPERFAMILY RNA-binding domain, RBD 94 203 IPR035979 GO:0003676
Vifa2g03731 367 Gene3D - 3 114 IPR012677 -
Vifa2g03731 367 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 194 IPR000504 GO:0003723
Vifa2g03731 367 SMART rrm1_1 118 190 IPR000504 GO:0003723
Vifa2g03731 367 SMART rrm1_1 12 83 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03731 Vifa-Chr2 1089905160 1089906483 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03731 13 261 Eukaryotic Initiation Factors Gene Family AT4G34110 25.391 4.40e-15 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03731 K14411 - gmx:100816822 466.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03731 2 1089905160 1089906483 Vifa2g03731 2 1089905160 1089906483 ECH