Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03700 ATGGACGACGCCTTTGCTAAATCTATTCCTGAGGTCCTTGACTTCTTTGGAGTGAACCCAACAAAGGGTTTATCCGACACTCAGGTTGTAAAACATGGCAGACTTTATGGTACAAATGTGCTGCATGAAGATCAAAGAGCTCCGTTTTGGAAATTGGTTGTGAAGCAATTTGATGATTTGCTTGTGAAGATACTAATTGCAGCTGCTCTTATATCATTTATTCTTGCATTAATTAATGGTGAAACAGGCTTGATGGCGTTTCTGGAGCCTTCTGTTATTCTGATGATATTGGCTGCAAATGCCGCTGTGGGAGTGATTACAGAAACAAATGCCGAAAAAGCTCTGGAGGAGCTACGTGCTTATCAAGCTGATGTGGCAACTGTCTTGCGAAGTGGTTGTTTTTCCATACTTCCTGCAACTGAACTTGTTCCTGGGGATATTGTGGAAGTTTCTGTGGGGTGCAAAATTCCTGCTGATATGAAGATGATTGAATTGCTAAGTAATGAAGTACGGGTTGATCAAGCTATTCTTACAGGTGAGAGCAGCTCAGTTGAAAAAGAGCTTAAAACTACCACAGCAGCAAATGCAGTATACCAGGACAAAACAAATATTCTTTTCTCGGGAACAGTTGTGGTTGCTGGTAGGGCAAGAGCTATTGTGGTTGGAGTTGGTCCTAACACTGCCATGGGCAGCATACGTGATTCAATGTTGCGAACAGAGGATGAGGTGACACCGTTGAAAAAGAAGCTGGATGAATTTGGCACTTTTTTGGCCAAGGTTATTGCAGGCATATGCGTGTTGGTTTGGATTGTAAATATTGGTCACTTTCGTGACCCTTCTCATGGTGGTTTTGTGCATGGGGCAATTCATTATTTTAAGATTGCAGTTGCTCTGGCCGTTGCAGCAATTCCTGAAGGTCTCCCTGCTGTTGTAACGACGTGTTTGGCTCTTGGAACAAAGCGAATGGCTAGGTTGAATGCCATTGTTCGCTCTTTGCCGTCCGTTGAGACCTTGGGATGCACCACTGTAATCTGCAGTGACAAAACTGGGACTCTAACTACCAATATGATGTCAGTTGCAAAGATATGTATTGTTGAGTCTGCAAAAAGTAGTCCTTTTGTTACAGAATATGGTGTCAGTGGAACAACATATGCACCTGAAGGTATAATTTTTGACGAGGCAGGGGTGCAGCTTGGCATTCCAGCTCAATCACAATGCCTTCTTCACATGGCTATGTGTTCTGCTCTTTGCAATGAGTCAACCCTGCAGTATAATCCTGATAAAGGGAAGTATGAAAAAATTGGTGAGTCAACTGAAGTGGCACTACGTGTTTTGGTAGAAAAGGTCGGTCTCCCTGGTTTTAATTCTATGCCGTCAGCATTGAATATGTTGAGCAAGCATGAGCGCGCTTCTTACTGTAACCATTATTGGGAGGAACAATTTAGAAAGTTAGATATTTTGGAATTTTCTAGAGATCGGAAAATGATGAGTGTCCTTTGCAGCCGGAACCAGTTACTTGTTTTATTTTCCAAAGGTGCTCCAGAAAGTATAATCTCTAAATGTACAACCATTCTATGCAATTGCGATGGTTCTGTCATGCCACTTACTGCTGATATTCGATCAGAGCTGGATTCAATGTTCAACAGTTTTGCAGGAAAAGAAACATTGAGATGCCTAGCTTTGGCTCTCAAATGGATGCCCTCAGATCAACAGACTGTGTCCTTTGATGATGAGAAGGACCTCACGTTTATTGGATTGGTTGGGATGCTGGATCCACCAAGAGATGAAGTAAGAAATGCCATGCTTTCATGTATGACTGCTGGCATACGCGTTATAGTTGTCACTGGAGATAACAAGTCCACTGCTGAGTCACTTTGCCGCAAGATAGGTGCTTTTGACCATTTGATAGATTTTACTGAACATTCTTACACTGCTTCTGAGTTTGAAGAACTTCCAGCACTGCAACAAACTATAGCATTGCAGCGTATGGCACTTTTTACCAGGGTTGAGCCTTCTCATAAAAGGATGCTGGTTGAGGCATTGCAGCACCAAAATGAAGTGGTTGCAATGACTGGTGATGGAGTCAATGATGCACCTGCCTTGAAGAAGGCAGATATAGGAATTGCTATGGGATCAGGGACTGCTGTTGCTAAGAGTGCTTCAGACATGGTTCTGGCTGATGACAATTTTGCCTCAATTGTTGCGGCCGTGGCAGAGGGAAGGGCTATATACAATAATACAAAGCAGTTTATTAGATACATGATTTCTTCCAACATTGGTGAAGTAGTATGTATATTTGTGGCTGCAGTGCTTGGAATACCTGATACCCTGGCCCCTGTCCAGTTGCTTTGGGTCAATTTGGTCACTGATGGATTGCCTGCCACTGCTATTGGCTTCAATAAGCAAGACTCTGATGTGATGAAGGTTAAGCCTAGAAAGGTGAATGAAGCAGTTGTTACAGGTTGGCTCTTCTTTCGGTATTTGGTAATTGGAGCTTATGTTGGCCTTGCCACTGTTGCCGGTTTTATTTGGTGGTTTGTTTACGCTGATAGTGGCCCTAAACTACCATACTCTGAATTGATGAATTTTGACACTTGCCCGACCAGGGAGACAACTTATCCATGCAGTATATTTGAAGATCGACACCCATCTACTGTATCTATGACTGTGCTTGTTGTTGTTGAGATGTTCAATGCTCTGAACAATCTTAGTGAAAATCAATCCCTCCTGGTCATCCCTCCCTGGAGTAACATGTGGCTTGTTGGTTCTATAGTCCTAACTATGCTTCTTCACACACTAATTCTGTATGTTCACCCATTATCAGTTCTTTTCTCTGTAACACCATTGTCTTGGGCTGACTGGATGGCTGTCCTCTATCTTTCTCTACCGGTTATAATCATTGATGAGATCTTGAAGTTCTTTTCCAGAAATCCCAATGGTATGAGGTTCAGATTATGGTTTAGGAGGTCTGATTATGGTTTACTTCCAAAAAGAGAAGAATTAAAAGGTACCGTGAAAGATACTGTATACTGTAATATTTACCTTGTATTACTTATGTTTTCCTGA 3066 0.4227 MDDAFAKSIPEVLDFFGVNPTKGLSDTQVVKHGRLYGTNVLHEDQRAPFWKLVVKQFDDLLVKILIAAALISFILALINGETGLMAFLEPSVILMILAANAAVGVITETNAEKALEELRAYQADVATVLRSGCFSILPATELVPGDIVEVSVGCKIPADMKMIELLSNEVRVDQAILTGESSSVEKELKTTTAANAVYQDKTNILFSGTVVVAGRARAIVVGVGPNTAMGSIRDSMLRTEDEVTPLKKKLDEFGTFLAKVIAGICVLVWIVNIGHFRDPSHGGFVHGAIHYFKIAVALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVAKICIVESAKSSPFVTEYGVSGTTYAPEGIIFDEAGVQLGIPAQSQCLLHMAMCSALCNESTLQYNPDKGKYEKIGESTEVALRVLVEKVGLPGFNSMPSALNMLSKHERASYCNHYWEEQFRKLDILEFSRDRKMMSVLCSRNQLLVLFSKGAPESIISKCTTILCNCDGSVMPLTADIRSELDSMFNSFAGKETLRCLALALKWMPSDQQTVSFDDEKDLTFIGLVGMLDPPRDEVRNAMLSCMTAGIRVIVVTGDNKSTAESLCRKIGAFDHLIDFTEHSYTASEFEELPALQQTIALQRMALFTRVEPSHKRMLVEALQHQNEVVAMTGDGVNDAPALKKADIGIAMGSGTAVAKSASDMVLADDNFASIVAAVAEGRAIYNNTKQFIRYMISSNIGEVVCIFVAAVLGIPDTLAPVQLLWVNLVTDGLPATAIGFNKQDSDVMKVKPRKVNEAVVTGWLFFRYLVIGAYVGLATVAGFIWWFVYADSGPKLPYSELMNFDTCPTRETTYPCSIFEDRHPSTVSMTVLVVVEMFNALNNLSENQSLLVIPPWSNMWLVGSIVLTMLLHTLILYVHPLSVLFSVTPLSWADWMAVLYLSLPVIIIDEILKFFSRNPNGMRFRLWFRRSDYGLLPKREELKGTVKDTVYCNIYLVLLMFS 1021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03700 1021 FunFam Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 687 980 - -
Vifa2g03700 1021 FunFam Calcium-transporting ATPase 355 592 - -
Vifa2g03700 1021 SFLD C1.7: P-type atpase like 326 743 - -
Vifa2g03700 1021 Pfam Cation transporter/ATPase, N-terminus 7 72 IPR004014 -
Vifa2g03700 1021 NCBIfam HAD-IC family P-type ATPase 661 776 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa2g03700 1021 NCBIfam HAD-IC family P-type ATPase 92 371 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa2g03700 1021 Gene3D - 342 735 IPR023214 -
Vifa2g03700 1021 Pfam Cation transport ATPase (P-type) 415 524 - -
Vifa2g03700 1021 ProSitePatterns E1-E2 ATPases phosphorylation site. 347 353 IPR018303 -
Vifa2g03700 1021 Gene3D - 22 237 - -
Vifa2g03700 1021 FunFam Sodium/potassium-transporting ATPase subunit alpha 584 730 - -
Vifa2g03700 1021 Pfam Cation transporting ATPase, C-terminus 775 974 IPR006068 -
Vifa2g03700 1021 SUPERFAMILY Calcium ATPase, transmembrane domain M 2 976 IPR023298 -
Vifa2g03700 1021 SUPERFAMILY Calcium ATPase, transduction domain A 124 235 IPR008250 -
Vifa2g03700 1021 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 352 589 IPR023299 GO:0000166
Vifa2g03700 1021 Pfam haloacid dehalogenase-like hydrolase 582 705 - -
Vifa2g03700 1021 SMART Cation_ATPase_N_a_2 3 77 IPR004014 -
Vifa2g03700 1021 FunFam Calcium-transporting ATPase 112 237 - -
Vifa2g03700 1021 PRINTS P-type cation-transporting ATPase superfamily signature 714 726 - -
Vifa2g03700 1021 PRINTS P-type cation-transporting ATPase superfamily signature 345 359 - -
Vifa2g03700 1021 PRINTS P-type cation-transporting ATPase superfamily signature 607 617 - -
Vifa2g03700 1021 PRINTS P-type cation-transporting ATPase superfamily signature 691 710 - -
Vifa2g03700 1021 PRINTS P-type cation-transporting ATPase superfamily signature 173 187 - -
Vifa2g03700 1021 PRINTS P-type cation-transporting ATPase superfamily signature 585 596 - -
Vifa2g03700 1021 NCBIfam calcium-translocating P-type ATPase, SERCA-type 53 847 IPR005782 GO:0005388|GO:0006816|GO:0016020
Vifa2g03700 1021 PANTHER CALCIUM-TRANSPORTING ATPASE 9 978 - -
Vifa2g03700 1021 SUPERFAMILY HAD-like 578 739 IPR036412 -
Vifa2g03700 1021 SFLD p-type atpase 326 743 IPR044492 -
Vifa2g03700 1021 Gene3D - 355 592 IPR023299 GO:0000166
Vifa2g03700 1021 CDD P-type_ATPase_SERCA 5 976 - -
Vifa2g03700 1021 Gene3D - 55 976 - -
Vifa2g03700 1021 Pfam E1-E2 ATPase 122 324 - -
Vifa2g03700 1021 FunFam Calcium-transporting ATPase, putative 210 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03700 Vifa-Chr2 1082688923 1082728367 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03700 1 1002 Primary Pumps ATPases(2) AT1G10130 83.234 0.0 1709
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03700 K05853 - gmx:100783509 1810.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03700 2 1082688923 1082728367 Vifa2g03700 2 1082688923 1082728367 ECH