Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03698 ATGGCCCATGGTAATTTGAAGTCTGCCAACGTTCTACTGGATGAAAATTTGCTGACTCGTGTTTGCGACAATAGCTTGGATATTTTGAGACCATTGACGAAGGTTCTAGCAGTTAAATTAATTGATAAGGAAACTGAGACTATAATTTCAGTGAGAGGCTACGCTCCATCTGACCATGGCCAAACAAGGTTCAGCATAAGAGATGTCTTTGCCTTCAAAGTATTGCTTCTGGAATTATTAACAGGAAGGAAACTTTTGTATAGTGCCAAGCCAAGGGAAGAGCAATATCTGGCAAAATGGGCTTCACCCAGGCTTCGTGACAGCGCATTTGGAACAGATAGTAGATCCCATGTAGAAGACGATACTGTTCTATTTGAGAAGTCTCTCCAATCAGCCGACACAAGCTTTAAAAGTTCACCGATATTTAGTCATCTGCCAGCTTGA 444 0.4167 MAHGNLKSANVLLDENLLTRVCDNSLDILRPLTKVLAVKLIDKETETIISVRGYAPSDHGQTRFSIRDVFAFKVLLLELLTGRKLLYSAKPREEQYLAKWASPRLRDSAFGTDSRSHVEDDTVLFEKSLQSADTSFKSSPIFSHLPA 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03698 147 Pfam Protein tyrosine and serine/threonine kinase 2 91 IPR001245 GO:0004672|GO:0006468
Vifa2g03698 147 Gene3D Transferase(Phosphotransferase) domain 1 1 135 - -
Vifa2g03698 147 SUPERFAMILY Protein kinase-like (PK-like) 2 97 IPR011009 -
Vifa2g03698 147 PANTHER OS01G0253100 PROTEIN 2 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03698 Vifa-Chr2 1081962217 1081962814 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03698 1 107 Strubbelig Receptor Gene Family AT5G06820 49.541 1.00e-17 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Vifa2g03698 PK_Tyr_Ser-Thr 8.1e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03698 - - mtr:11428201 109.768