Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03684 ATGGCTTCACGATCAGAAGCTCCTGATATTAATATTGAAGCCGAATATTGTCCAGAAGCTGTGATTGAATGGTACCGTATAACAAGATTAAAAGATAATAAAAAAGGTGCTCGTAGAAAGGATTTGAGTTTGAAAGCAAAACAACATCTTGTTTTTTTAGGGTGGACACTTTGGTATATCGATAAAAAGTGTAAATGGGAAATGCGTTATACTTCGCCTAGGAATGGAAAACATTATAACACTCTTAAGAATGCATGTGAAAGTTGTATTAAAGATGGAAGTTGTTTCGTTCAAGACCCTTCAACTTCTCTACAAGCACCACCTACAATAGTTTCTTCGAAGACAAGAAAGCGATTGATATATTATAAAGAATACGATCAATCAAGTTCGAGCGATGATTATGAAGATAATGATACTATAACTTCAACTTCAAAGGAGGATGAGGAATATGCGAATCAAGGTGAATCAGAAGTTACTAGTAGAATGGAGAATGTTTCGGAAGGTTGTAGCAAAAGAGGGAAGGTATTGAATATGAGTGTAAGGAAAAGGTGCACACTTGTTTATTGGTTGATAGAGAATCAAGTTTTGGATTCAGGGACTAATGTGATATGCCGTGGTGGTAATGATATCGTCAAAAAAGGGAAAATATTTTGTGATGGTATAATTTGTGATTGTTGTCATGATAATTTCAATATGACTGCATTTGAGGCTCATGCTTGTTGTACAAGGCATAGACCATCGACTAGTATTTGCTTAGAAGACGGGAGATCGTTGTTGGAATGTCAAAGAGAAGCTTTGAGTTCACGTTGTGAAAAGGAGAATCGTTTTATTGGCGAAGAGAAATTAGAAAGATATAATGATACTTTTTGTTTAGTTTGTGGTTTAGGAGGTGACATAATACTATGTGATCAATGTCCTTCTTCGTTTCATCTTGGTTGTTTAGGTCTTGGTCGAGTTCCGGATGGTGATTGGTTTTGTCCAACTTGTTGTTGCAAAATATGTCATCAACCTAAATGCAAACAAGAAGAATGTGTGGATCAAATGGATGATAACATTATTATTATTTGTGTTCAATGTGAGCAAAAATTTCACTATGGATGCTTAAAGGCTATAGGATTCGGTGACATGGAGAACAATGGTGAAAAGAAGAATTGGTTTTGTAGTGTGGATTGTGGGAAAATATTCTCATGTCTAAAGAATATGTTAGGTAAGCCAATCAAGATTGCAAATAATCTAACTTGGACATTGTTTAAGAATGTGAGTAATGGTCAAAATGAGAGTAAGTTGAATGAGATTCTTGGTGTATTGCAGGAGAGTTTCGACCCGATTGTTGATGCTATAACAAAAAGAGAAATGATTGAAGATGTTGTTTTTAGTAGATACTCAGAACATAATCGGTCTAACTTTAGTGGTTTCTATAATGTGATTTTAGAGAAAATGGGTCAAGTGGTTTCTGTGGCAACTATAAGAATTTATGGTCCAAAGGTTGCGGAGATAGTTTTTGTGGCTACCAAAAAACAACATCGAAGACAAGGAATGTGTTTGTTGTTGATGGATGAGCTTGAGAAGTGGTTGACCTGCTTAGAAATAAGGAGCTTGGTTTTGCATTCCTCTGAAAGTACTATAAACACCTGGACAAAATCATTTGGATTTGATATAATGTCAGGTAATGTCAAGTGTCAATTTATTAATCATACTCTTTTAGAGTTTCAGAATACTATTATGTGTCTTAAATCACTTAATAGACGAATACGACGCTGA 1761 0.3504 MASRSEAPDINIEAEYCPEAVIEWYRITRLKDNKKGARRKDLSLKAKQHLVFLGWTLWYIDKKCKWEMRYTSPRNGKHYNTLKNACESCIKDGSCFVQDPSTSLQAPPTIVSSKTRKRLIYYKEYDQSSSSDDYEDNDTITSTSKEDEEYANQGESEVTSRMENVSEGCSKRGKVLNMSVRKRCTLVYWLIENQVLDSGTNVICRGGNDIVKKGKIFCDGIICDCCHDNFNMTAFEAHACCTRHRPSTSICLEDGRSLLECQREALSSRCEKENRFIGEEKLERYNDTFCLVCGLGGDIILCDQCPSSFHLGCLGLGRVPDGDWFCPTCCCKICHQPKCKQEECVDQMDDNIIIICVQCEQKFHYGCLKAIGFGDMENNGEKKNWFCSVDCGKIFSCLKNMLGKPIKIANNLTWTLFKNVSNGQNESKLNEILGVLQESFDPIVDAITKREMIEDVVFSRYSEHNRSNFSGFYNVILEKMGQVVSVATIRIYGPKVAEIVFVATKKQHRRQGMCLLLMDELEKWLTCLEIRSLVLHSSESTINTWTKSFGFDIMSGNVKCQFINHTLLEFQNTIMCLKSLNRRIRR 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03684 586 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 415 573 IPR000182 GO:0016747
Vifa2g03684 586 Pfam Acetyltransferase (GNAT) family 458 551 IPR000182 GO:0016747
Vifa2g03684 586 PANTHER PHD FINGER PROTEIN 12 18 582 IPR042163 GO:0003714|GO:0045892
Vifa2g03684 586 MobiDBLite consensus disorder prediction 138 154 - -
Vifa2g03684 586 CDD NAT_SF 475 536 - -
Vifa2g03684 586 Pfam PHD-finger 289 331 IPR019787 -
Vifa2g03684 586 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 426 565 IPR016181 -
Vifa2g03684 586 ProSiteProfiles Zinc finger PHD-type profile. 287 332 IPR019787 -
Vifa2g03684 586 SMART PHD_3 331 391 IPR001965 -
Vifa2g03684 586 SMART PHD_3 289 330 IPR001965 -
Vifa2g03684 586 SUPERFAMILY FYVE/PHD zinc finger 278 331 IPR011011 -
Vifa2g03684 586 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 277 352 IPR013083 -
Vifa2g03684 586 Gene3D - 411 577 - -
Vifa2g03684 586 Pfam Tify domain binding domain 214 265 IPR032308 -
Vifa2g03684 586 MobiDBLite consensus disorder prediction 128 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03684 Vifa-Chr2 1079662726 1079664486 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03684 158 528 PHD Transcription Factor Family AT5G58610 38.557 6.03e-81 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vifa2g03684 Acetyltransf_1 6.2e-09 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03684 - - psat:127079034 857.055