LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa2g03681	ATGATGGAGCATAAAAGGAGCATTTGCTCTGTTGATCAAAGCAATTATAATTCCATTGCATCTAAAAAGCAAAAGCCTGATTTATCGATCACCACTAAGGATAGGAAGGAAAAGATTGGCGAACGAATTGTTGCTCTTCAACAGCTTGTTTCACCATATGGAAAGACAGATACATCTTCTGTTCTAAAGGAGGCGATGGAATACATAGGGTTCCTTCATAAACAAGTTAAGCTGCTTAGTGCTCCTTACCTTGAAACTACACCAGCAATCCAGATGCAGGATACAGAGTCATGCAGCCTTAGGAGTAGAGGGTTATGTCTTTTTCCTGTCTCATTTACTATTGGAGTTGCTGAGGGCAATGGTGCAGACATTTGGGCTCCGATCAAGACCACTTCGCCTGATTCTGAGAAAGATGTTTCTCAAATTCAGTGA	432	0.412	MMEHKRSICSVDQSNYNSIASKKQKPDLSITTKDRKEKIGERIVALQQLVSPYGKTDTSSVLKEAMEYIGFLHKQVKLLSAPYLETTPAIQMQDTESCSLRSRGLCLFPVSFTIGVAEGNGADIWAPIKTTSPDSEKDVSQIQ	143

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa2g03681	143	Gene3D	-	20	94	IPR036638	GO:0046983
	Vifa2g03681	143	PANTHER	TRANSCRIPTION FACTOR BHLH83-RELATED	22	113	-	-
	Vifa2g03681	143	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	31	90	IPR036638	GO:0046983
	Vifa2g03681	143	FunFam	Transcription factor bHLH113 family	22	98	-	-
	Vifa2g03681	143	CDD	bHLH_AtbHLH_like	29	80	IPR045239	-
	Vifa2g03681	143	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain profile.	23	72	IPR011598	GO:0046983

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa2g03681	Vifa-Chr2	1077326466	1077327577	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa2g03681	1	130	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT1G05710	51.974	1.58e-50	157

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa2g03681	-		-	gmx:100809747	236.498

Showing 1 to 1 of 1 entries