Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03675 ATGGCTATGGAAGCACTTAACTCACCCACCACCGCTACTCCTTTCACTCCCTTCGAGGAACCCAATCTCAGCTACCTCGATACACCGTGGACCAAAGGTAAACGTTCTAAGCGCTCTCGTATGGATCAATCTTCATGCAGTGAAGAAGAGTATCTCGCTCTTTGTCTCATCATGCTCGCTCGCAGCGGCAACAACTCCGCCGCCAAACAGACTCTATCTGATACTGAATCGGCGCCGGCGCCGCTAACCACCGATAAACTCAGTCACAAATGCTCTGTCTGCAATAAAGCTTTTTCATCTTACCAAGCACTCGGAGGACACAAAGCCAGCCACCGGAAACTCCTTATATCAACGGCTGAAGATCACAAACACACCACCACCACCACCGCCTCATCTGCCGTGACTACCAGCTCTGCATCCAATAAGATCAAGACTCACGACTGTACCATCTGTCACAAATCCTTCCCTACCGGACAGGCTTTGGGTGGACACAAGCGTTGCCACTACGAAGGCGGTGCAGGCGGCGGAGCCGGAAGTAGCGCCGTAACCGCCTCTGAAGGAGTTGGATCCTCTCACAGCCAGCACCGAGATTTTGATCTTAACCTCCCGGCTTTTCCAGACTTTTCAAAGAAGTGTTTCGTGGATGACGAGGTTTCCAGCCCTCTGCCTGCAGCCAAGAAGCCATTTCTTTTCAAGATTGAAATTCCTCAACACTGA 717 0.5146 MAMEALNSPTTATPFTPFEEPNLSYLDTPWTKGKRSKRSRMDQSSCSEEEYLALCLIMLARSGNNSAAKQTLSDTESAPAPLTTDKLSHKCSVCNKAFSSYQALGGHKASHRKLLISTAEDHKHTTTTTASSAVTTSSASNKIKTHDCTICHKSFPTGQALGGHKRCHYEGGAGGGAGSSAVTASEGVGSSHSQHRDFDLNLPAFPDFSKKCFVDDEVSSPLPAAKKPFLFKIEIPQH 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03675 238 Gene3D Classic Zinc Finger 86 168 - -
Vifa2g03675 238 ProSitePatterns Zinc finger C2H2 type domain signature. 148 168 IPR013087 -
Vifa2g03675 238 MobiDBLite consensus disorder prediction 1 20 - -
Vifa2g03675 238 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 111 IPR013087 -
Vifa2g03675 238 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
Vifa2g03675 238 SMART c2h2final6 146 168 IPR013087 -
Vifa2g03675 238 SMART c2h2final6 89 111 IPR013087 -
Vifa2g03675 238 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 35 204 IPR044653 GO:0003700
Vifa2g03675 238 MobiDBLite consensus disorder prediction 1 18 - -
Vifa2g03675 238 Pfam C2H2-type zinc finger 89 113 - -
Vifa2g03675 238 Pfam C2H2-type zinc finger 146 169 - -
Vifa2g03675 238 SUPERFAMILY beta-beta-alpha zinc fingers 89 168 IPR036236 -
Vifa2g03675 238 ProSiteProfiles Zinc finger C2H2 type domain profile. 146 168 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03675 Vifa-Chr2 1075677804 1075678520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03675 1 235 C2H2 Transcription Factor Family AT1G27730 51.837 6.98e-67 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa2g03675 zf-C2H2_6 1.6e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03675 - - gmx:100800095 291.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03675 2 1075677804 1075678520 Vifa2g03675 2 1075677804 1075678520 ECH