Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03655 ATGGGGAGAGTGAAGCTTCAGATCAAAAAGATTGAGAACACAACAAATAGACAAGTCACATTCTCGAAGAGGAGAAATGGTTTAATGAAGAAAGCTTATGAACTTTCTGTTCTCTGTGATGTTGATGTGGCTCTCATCATGTTTTCTCCTTCTGGTAGAGCCACTCTCTTTTCTGGCAATAGAAGCGTGGAAGAAATTCTTGATCGATATATAAATCTTCCTGATAGTGAACGTGGAAGGACGCATAATAATGAGCATATTCGAAAGGTTCTTCATAGGTTGAAAGCCGAAACCGAACAAATATATCCAGCTCCTGGCGCGATGATTGCAGACACAAAACTCAAGGAGGTTCAAAGGGAAATTTTTGTTTGCAGATCTCAATTGGAAGAGATGATGAATCGACTAAGGATATTCGAAGGAAATCCTTCTGAGATTACCACATTAAGTGAGGCCGAATATCGTGAACAAGTCCTTCAAGAAACTTTAAAACAAGTACAAATGCGAAAACGTTATTTGGAGGAAGAACAAATTTCTCATGCATCTCAGCAGGTACATCTTACAAAAACTGTAGATGTCAGTGGATCTTCTGCTGGAACTACAGAGAATGCGTTAGACTGGTTTTCAGGAGATACTATTACCAATGACCAGATTTTGAACTTTGTGAATGGTTATGACCCTCCTCCTCCTCTCAGTGATCAACAATCACTAAATACTGTTGTCGATATGGTGACACCGACTTCAACCCTTCTGCATGCTGCAAACATGAATCGTGACTATCAAGTTAGTCTCAAGGATGGTGCAGAGGCTGCTGATATTAATAATACACCAAGTCCTGAATTTGGACAAGTTATGGACACCAGTTTGGCTTATTGGGCAAACGTTTATCATACAGGATCGTTTCGTCATGATCAACTTCAAACATGA 924 0.3972 MGRVKLQIKKIENTTNRQVTFSKRRNGLMKKAYELSVLCDVDVALIMFSPSGRATLFSGNRSVEEILDRYINLPDSERGRTHNNEHIRKVLHRLKAETEQIYPAPGAMIADTKLKEVQREIFVCRSQLEEMMNRLRIFEGNPSEITTLSEAEYREQVLQETLKQVQMRKRYLEEEQISHASQQVHLTKTVDVSGSSAGTTENALDWFSGDTITNDQILNFVNGYDPPPPLSDQQSLNTVVDMVTPTSTLLHAANMNRDYQVSLKDGAEAADINNTPSPEFGQVMDTSLAYWANVYHTGSFRHDQLQT 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03655 307 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Vifa2g03655 307 Coils Coil 155 175 - -
Vifa2g03655 307 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vifa2g03655 307 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 55 IPR002100 GO:0003677|GO:0046983
Vifa2g03655 307 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
Vifa2g03655 307 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Vifa2g03655 307 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 196 - -
Vifa2g03655 307 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vifa2g03655 307 Coils Coil 114 134 - -
Vifa2g03655 307 FunFam Agamous-like MADS-box protein AGL66 isoform A 14 79 - -
Vifa2g03655 307 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vifa2g03655 307 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vifa2g03655 307 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03655 Vifa-Chr2 1069069932 1069071877 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03655 1 178 Type I MADS-box Gene Family AT1G77980 45.026 2.31e-47 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vifa2g03655 SRF-TF 3.9e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03655 - - cam:101506754 419.083